Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0575
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55856| Best HMM Match : TPR_2 (HMM E-Value=4.1e-14)                 29   3.3  
SB_55624| Best HMM Match : PHD (HMM E-Value=3.8)                       28   4.4  

>SB_55856| Best HMM Match : TPR_2 (HMM E-Value=4.1e-14)
          Length = 742

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -1

Query: 484 TESFVATLTALEIICQPLC*IFPQQSTQ*LSNSHLSNYYVEALIYIIIHKRAMPLYL 314
           TE  + TLT  + +   +C    + ST         N+Y EAL+Y   H +   LYL
Sbjct: 125 TEQTMNTLTKAKEVQTRICSEMAEISTASREYDKAINFYKEALVYDDTHIQCSKLYL 181


>SB_55624| Best HMM Match : PHD (HMM E-Value=3.8)
          Length = 349

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +3

Query: 378 DKCELDNYCVLCCG----NI*HKGWQIISSAVNVATNDSVTESK 497
           D+CEL  Y + CCG    ++ H+ W  ++S   V   + V +SK
Sbjct: 149 DECELHGYHMACCGILGEDVRHQ-WSRVASQGKVPLLEQVEQSK 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,727,758
Number of Sequences: 59808
Number of extensions: 265193
Number of successful extensions: 442
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)