Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0575
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47068-6|CAA87334.2|  272|Caenorhabditis elegans Hypothetical pr...    31   0.72 
AF016684-9|AAB66212.2|  348|Caenorhabditis elegans Hypothetical ...    29   1.7  

>Z47068-6|CAA87334.2|  272|Caenorhabditis elegans Hypothetical
           protein F15G9.5 protein.
          Length = 272

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 387 ELDNYCVLCCGNI*HK 434
           E DNYC LCCGN  H+
Sbjct: 73  EEDNYCYLCCGNSEHQ 88


>AF016684-9|AAB66212.2|  348|Caenorhabditis elegans Hypothetical
           protein F45C12.14 protein.
          Length = 348

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +2

Query: 176 VSLVF----FFNQARDSWMKPIPFFNGSWFLVPILKHY 277
           VS+VF     +N A   W  P+ F  GSW ++P ++H+
Sbjct: 88  VSVVFSTEQLYNVASGKWKLPVSF--GSWKILPFIQHF 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,342,852
Number of Sequences: 27780
Number of extensions: 213099
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)