Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0574
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 32 0.085
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 0.80
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 29 0.80
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 29 0.80
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.4
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 27 3.2
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.2
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 27 3.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.6
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 7.4
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 7.4
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 7.4
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 25 7.4
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 25 7.4
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 9.8
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 25 9.8
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 9.8
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 25 9.8
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 31.9 bits (69), Expect = 0.085
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 338 GTRAHAARTYAPARS-SARQSTAPAAACNARRPSTSARTSHNATRSRRDSGTRLCYARLQ 514
GT A ++ A S + + TAPAA+ +A P+TSA S A+ S + A+
Sbjct: 927 GTSNKPAFSFGSATSKTTSEGTAPAASASAPAPTTSA-FSFGASNSSMNKEENTPMAKDA 985
Query: 515 EDTSPVSHVTDNEDDCRKDGPSP 583
DT+P S + P P
Sbjct: 986 GDTAPASGFKSGFSFGANNSPQP 1008
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 28.7 bits (61), Expect = 0.80
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 148 SPVGTP--QPPAIPNQVSPPGPIPTQTFTNQHYVQLPGVES 264
SP+GT PAI QV+P P P T +H+ P V S
Sbjct: 711 SPMGTGAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPPPVRS 751
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 28.7 bits (61), Expect = 0.80
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = +2
Query: 371 PARSSARQSTAPAAACNARRPSTSARTSHNATRSRRDSGTRLCYARLQEDTSPVSHVTDN 550
P S++ +T+PA +PST T+ AT++ + S + L ++P + T +
Sbjct: 233 PTTSASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSASN--SPALSGSSTPSN--TSS 288
Query: 551 EDDCRKDGPSPELENGGDRKGDSH 622
+ + G E + DR G+SH
Sbjct: 289 RSNRQNHGNFSE-KRHYDRYGNSH 311
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 28.7 bits (61), Expect = 0.80
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -2
Query: 635 VCIDCGSLPYGRHRSLTLDSVHLFCNRLRYRSRAKPAKYLLADGRNRGVYQSRD 474
VC DC S LD++ L N Y S A+P+ +L+ D N+ + +RD
Sbjct: 293 VCYDCVSF------LKLLDTLVLSVNVSSYPSNAQPSPWLMLDAANKMIRVARD 340
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 146 TVR*AHHNRPRFLIKYRHLDLSQLRLLPINI 238
T+ HHN F+ ++R +DL L LL I +
Sbjct: 263 TLNLPHHNHVSFMTRFRKIDLKGLILLIIGV 293
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = -2
Query: 617 SLPYGRHRSLTLDSVHLFCNRLRYRSRAKPAKYLLADGRNRGVYQSRDESGLHCV 453
SLP+ ++ L + HL + RY+ A ++ G+N ++Q+ ++G+ +
Sbjct: 99 SLPFADRSAIFLKAAHLISTKYRYKLMAAT---MIGQGKN--IWQAEIDAGMEII 148
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 3.2
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 22 LPPITLQEVEHAYFAQQYPQQRPITEVIGSQNFFFLQES-EIDSPVGTPQPPAIPNQVSP 198
LP T + VE A FA+Q P + E S +QE+ E + VG + N+V+
Sbjct: 368 LPHPTAETVEIARFAEQ-PVRAQQPEQYESS---VVQEATETVTDVGKGVSSTVKNEVNV 423
Query: 199 PGPIPTQT 222
P IPT++
Sbjct: 424 PSTIPTES 431
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +1
Query: 151 PVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLPGVESR-NLAA 279
P P PPA P PP P P +LP + R NL A
Sbjct: 464 PAAPPLPPAAP--APPPAPAPAPAAPVASIAELPQQDGRANLMA 505
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 533 KPAKYLLADGRNRGVYQSRDES 468
K A Y +A GRN G+Y + DE+
Sbjct: 5 KRAYYAVARGRNTGIYSTWDEA 26
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 136 SEIDSPVGTPQPPAIPNQVSPPGPIPTQTFT 228
+ + S V P PPA P+Q PP P PT T
Sbjct: 264 NNLGSQVNIPPPPATPSQ--PPRP-PTNAST 291
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 656 LGRRDRNVCIDCGSLP 609
LG+ D++V IDC SLP
Sbjct: 19 LGQEDQSVEIDCSSLP 34
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 163 PQPPAIPNQVSPPGPIPTQTFTNQHYVQLPGVESRNLAACP 285
P PP++ + P GP P +++N P + + A P
Sbjct: 48 PPPPSVDHSAPPSGPPP--SYSNSAAPATPAASASSAAPAP 86
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 97 EVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSP-PGPIPTQTFTNQHYVQLPGVESRNL 273
EV Q+ + ++ P P PNQ +P P + + QH+ Q P +++RN+
Sbjct: 195 EVFNQQSKETKKSLQVPPSRNVPPPVTRPNQYNPEPNFSLSSGYPQQHFSQ-PELQNRNV 253
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 201 WTYPNSDFYQS 233
WTYP S FYQ+
Sbjct: 362 WTYPGSQFYQN 372
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 539 VTDNEDDCRKDGPSPELENGGDRKGDS 619
+ D EDD D PSP ++ KG S
Sbjct: 101 IEDTEDDMFADSPSPSVKRQNTGKGIS 127
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 172 PAIPNQVSPPGPIPT 216
P +P ++ PPGP PT
Sbjct: 762 PEMPTRMPPPGPSPT 776
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/62 (20%), Positives = 26/62 (41%)
Frame = +2
Query: 371 PARSSARQSTAPAAACNARRPSTSARTSHNATRSRRDSGTRLCYARLQEDTSPVSHVTDN 550
PA +++++APAAA + + S + + +G +E VS+ +
Sbjct: 80 PAEPESKETSAPAAAVEIEKENESIISKETSQAPETSTGAEEHQETTEESKQSVSNEVSS 139
Query: 551 ED 556
D
Sbjct: 140 PD 141
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.0 bits (52), Expect = 9.8
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Frame = +2
Query: 344 RAHAARTYAPARSSARQSTAPAAACNARRPSTSARTSHNATRSRRDSGTRLCYARLQEDT 523
++H + T + + PA+ RP+ S ++ N R G + + +
Sbjct: 29 KSHKSNTSSIHERENTAAKGPASNVRPARPNVSTSSTSNEVRKSVPVGNPTVHTKTGSSS 88
Query: 524 SPVSHVTDNEDDCRKDGPSPELENG-GDRK 610
SP S + + + + + N G+RK
Sbjct: 89 SPASKMRNTVNLQHIQAANQKTRNAEGERK 118
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 25.0 bits (52), Expect = 9.8
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 107 ALKTFSFYKSLKL-TVR*AHHNRPRFLIKYRHLDLSQLRLLP 229
AL+ + Y LKL T + + FL+K+ +D LRLLP
Sbjct: 35 ALQAYKIYDLLKLETSSISDVPKSGFLVKWIIIDAIYLRLLP 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,422
Number of Sequences: 5004
Number of extensions: 47342
Number of successful extensions: 189
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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