Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0574
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)                37   0.013
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.013
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    31   0.84 
SB_36777| Best HMM Match : VWA (HMM E-Value=0)                         31   0.84 
SB_11628| Best HMM Match : DUF1014 (HMM E-Value=0.64)                  30   1.5  
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               29   2.6  
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)             29   3.4  
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_55276| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)                  28   5.9  
SB_48721| Best HMM Match : TorD (HMM E-Value=5.3)                      28   5.9  
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                 28   5.9  
SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)                    28   7.9  
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)              28   7.9  
SB_31880| Best HMM Match : I-set (HMM E-Value=0.082)                   28   7.9  
SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
          Length = 623

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
 Frame = +1

Query: 133 ESEIDSPVGTPQPPAIPNQVSPPG----PIPTQTFTNQHYVQLPGVESRNLAACPCR-LS 297
           +S ++S    P PP IP + SPPG    PIPTQ   N HY  LPG ++  L   P + LS
Sbjct: 358 KSSLESAPRKPSPP-IPEE-SPPGAMAAPIPTQD--NNHYPSLPGSKTPLLTHVPSKPLS 413

Query: 298 LIFH 309
           +  H
Sbjct: 414 VTEH 417


>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
 Frame = +1

Query: 133 ESEIDSPVGTPQPPAIPNQVSPPG----PIPTQTFTNQHYVQLPGVESRNLAACPCR-LS 297
           +S ++S    P PP IP + SPPG    PIPTQ   N HY  LPG ++  L   P + LS
Sbjct: 325 KSSLESAPRKPSPP-IPEE-SPPGAMAAPIPTQD--NNHYPSLPGSKTPLLTHVPSKPLS 380

Query: 298 LIFH 309
           +  H
Sbjct: 381 VTEH 384


>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
 Frame = +1

Query: 1   PGYPLRPLPPITLQEVEHAYFAQQYPQQRPITEVIGSQNFFFLQESEIDSPV----GTPQ 168
           P  P  P PPITL   +H      +P   P      +       ++++   V      P 
Sbjct: 111 PPPPPPPPPPITLHHEQHVVSHVMHPAPPPPPPPPPAPCMPPCHQTQVVHSVQLHASPPG 170

Query: 169 PPAIPNQVSPPGPIPTQTFTNQHYVQLPGVESRNLAACPC 288
           PP  P    PP  +P+      H+V  P      +A  PC
Sbjct: 171 PPPAPMPAPPPMVVPSHRHV-FHHVTHPAPPPMQMAPAPC 209


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 151 PVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLPG 255
           P+G    P +P    PPGP P  TF + H+ Q  G
Sbjct: 898 PMGPMGDPGLPGPPGPPGP-PVSTFYHHHHHQHHG 931


>SB_36777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1303

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +1

Query: 7    YPLRPLPPITLQEVEHAYFAQQYPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPN 186
            YP+R    +  ++ + +YF  Q    +   + + +Q   + ++   +  V TP P  +PN
Sbjct: 1209 YPIR----MGARKGDTSYFRGQISCMQVYDKPLNAQQIVYARDICDNLQVSTPSPSLVPN 1264

Query: 187  QVSPPGPIP 213
             V  P P P
Sbjct: 1265 PVPQPAPAP 1273


>SB_11628| Best HMM Match : DUF1014 (HMM E-Value=0.64)
          Length = 423

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 172 PAIPNQVSPPGPIPTQTFTNQHYVQLPGVESRN 270
           P  P  V  P   P +  T+  Y+Q+PGV  +N
Sbjct: 291 PVAPTMVKEPQESPQKLSTSLPYIQMPGVTGKN 323


>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 403

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +1

Query: 1   PGYPLRPLPPITLQ-EVEHAYFAQQYPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPA 177
           P YP +P P IT    + H   +  YP  +P+  +  S +   LQ S        P+ P 
Sbjct: 87  PSYPYKPFPRITTSPSLVHLQASPSYP-YKPLPRIPTSLSLISLQASPSYPYKPLPRIPT 145

Query: 178 IPNQVSPPGPIP 213
            P    P  P+P
Sbjct: 146 SPPSY-PYKPLP 156


>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
          Length = 482

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 338 GTRAHAARTYAPARSSARQSTAPAAACNARRPSTSARTSHNATRSR 475
           G R  A+  Y  ARS  ++ +A  AA   R     AR+  +A+RSR
Sbjct: 236 GPRGRAS--YRSARSGRQRDSARKAAAGGRTADQGARSGDSASRSR 279


>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +1

Query: 40  QEVEHAYFAQQYPQQRPITEVIGSQ-NFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIPT 216
           ++V+H    QQ    +P      SQ NF F Q + +  P     P  +  Q   P P PT
Sbjct: 117 EQVKHVQHLQQQIALQPQLNGYPSQINFSFPQTAAVTLPQQIQHPTQLSQQPQQPDPPPT 176


>SB_55276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
 Frame = +2

Query: 362 TYAPARSSARQSTAPAAACNARRPSTSARTSHNATRSRRDSGTRLCYARL---QEDTSPV 532
           T AP+ SSA Q +   +  ++  P++  + + N   +  ++GT     ++   Q +T P 
Sbjct: 107 TSAPSPSSAEQKSEGVSPSDSTPPASGNKAADN-KENHTENGTSALDDQIDASQTNTIPP 165

Query: 533 SHVTDN--EDDCRKDGPSPELENGGDR 607
            H   N   +D  K  P P+LE   +R
Sbjct: 166 LHRPHNRPSNDAPKLPPLPKLERSEER 192


>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
          Length = 918

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 355 RPYLRTRTVLCPPIYRSRCRL*RTPPLHLSPYITQCN 465
           +PYLRT TV  P +   + +L RT    L P    C+
Sbjct: 324 KPYLRTFTVADPKVQLYQAKLHRTASAPLGPQRISCS 360


>SB_48721| Best HMM Match : TorD (HMM E-Value=5.3)
          Length = 138

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/80 (21%), Positives = 31/80 (38%)
 Frame = +2

Query: 356 ARTYAPARSSARQSTAPAAACNARRPSTSARTSHNATRSRRDSGTRLCYARLQEDTSPVS 535
           ART  P++     +    A C+    +     + + T +   +  R C+ R      P  
Sbjct: 14  ARTDRPSQQLRSLNGEWDAPCSGALSAAGVVVTRSVTATLASADVRRCFCRYAPPPHPPF 73

Query: 536 HVTDNEDDCRKDGPSPELEN 595
               N ++ R D PS +L +
Sbjct: 74  ASWRNSEEARTDRPSQQLRS 93


>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 352

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 148 SPVGT-PQPPAIPNQVSPPGPIPTQTFTNQHYVQLP 252
           +P G  P PPA P  + PP P P  TF N   +  P
Sbjct: 192 APPGVLPPPPAPPGALIPPPPAP-PTFNNNQNMGYP 226


>SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)
          Length = 1311

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 187 QVSPPGPIPTQTFTNQHYVQLPGVESRNLAACP 285
           Q+ PP  I   +  + HY+ L GV  R +  CP
Sbjct: 303 QLYPPLVIAWSSAGHNHYIPLVGVSGRPIPKCP 335


>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
          Length = 577

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 154 VGTPQPPAIPNQVSPPGPIPTQ 219
           +G+  PP +P +V  PGPI  Q
Sbjct: 49  MGSKGPPGVPGEVGKPGPIGYQ 70


>SB_31880| Best HMM Match : I-set (HMM E-Value=0.082)
          Length = 301

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 374 ARSSARQSTAPAAACNARRPSTSARTSHNATRSRRDSGTRLCYARLQEDTS-PVSHVT 544
           + SS  ++T P+ ACN+     S R +HN    R++    L    + + T  P S VT
Sbjct: 143 SNSSRNKTTNPSIACNSPSSYLSNRQTHNQDWLRKNDTQFLAVEAVMKFTGWPSSPVT 200


>SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 326 RVCTGTRAHAA-RTYAPARSSARQSTAPAAACNARRPSTSARTSHNATRS 472
           R   GT + ++ ++  P RSS   ST      +  RPS++++ S++ TRS
Sbjct: 19  RAKKGTSSTSSPKSSRPGRSSLASSTDSITQTSNARPSSASKPSNSRTRS 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,530,353
Number of Sequences: 59808
Number of extensions: 424919
Number of successful extensions: 1964
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1927
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)