Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0574
(666 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family... 33 0.13
At1g69600.1 68414.m08005 zinc finger homeobox family protein / Z... 31 0.52
At4g07500.1 68417.m01161 hypothetical protein 31 0.91
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 30 1.6
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 29 2.1
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 29 2.1
At2g20690.1 68415.m02429 lumazine-binding family protein SP|P508... 29 2.8
At3g45120.1 68416.m04870 hypothetical protein 29 3.7
At4g30820.2 68417.m04368 cyclin-dependent kinase-activating kina... 28 4.9
At4g30820.1 68417.m04367 cyclin-dependent kinase-activating kina... 28 4.9
At4g16140.1 68417.m02445 proline-rich family protein contains pr... 28 4.9
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 28 4.9
At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family p... 28 4.9
At2g18470.1 68415.m02151 protein kinase family protein contains ... 28 4.9
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro... 28 6.4
At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibit... 28 6.4
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 28 6.4
At3g20570.1 68416.m02604 plastocyanin-like domain-containing pro... 28 6.4
At2g09865.1 68415.m01022 hypothetical protein 28 6.4
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 27 8.5
At5g38690.1 68418.m04678 expressed protein 27 8.5
At4g10640.1 68417.m01738 calmodulin-binding family protein conta... 27 8.5
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 27 8.5
At1g75080.2 68414.m08720 brassinosteroid signalling positive reg... 27 8.5
At1g75080.1 68414.m08719 brassinosteroid signalling positive reg... 27 8.5
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein... 27 8.5
>At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family
protein
Length = 523
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +1
Query: 76 PQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPI 210
PQQ+P E GS F LQE + D+ P P + P Q PP I
Sbjct: 160 PQQQPNDESQGSPVFVKLQEMQ-DATSSPPPPESKPGQADPPDNI 203
>At1g69600.1 68414.m08005 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 242
Score = 31.5 bits (68), Expect = 0.52
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 SQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQL 249
S+N FL I SP GT PP+ VS P P T H+V L
Sbjct: 84 SENLNFLTAPPISSPSGTESPPS--RHVSSPVPCSYYTSAPPHHVIL 128
>At4g07500.1 68417.m01161 hypothetical protein
Length = 239
Score = 30.7 bits (66), Expect = 0.91
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = +1
Query: 133 ESEIDSPVGTPQ----PPAIPNQVSPPGPIPTQTFTNQHYVQLPGVESRNLAACPCRLSL 300
E E P G P+ A+P ++S P PI + Q YV +RN A CR
Sbjct: 159 EDEFIDPAGGPRVGSSSSALPYELSSPPPILMEPQVFQQYVVDSFKSARNAIATLCR--- 215
Query: 301 IFHRIQSMQGLHRHPCP 351
F + + HR P P
Sbjct: 216 -FGCVAPTRRRHRSPAP 231
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +1
Query: 10 PLRPLPPI-TLQEVEHAYFAQQ--YPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAI 180
P +P PP +L + + QQ YPQQ P + + + +E P PP
Sbjct: 313 PYQPPPPTQSLHQPPYQPPPQQPQYPQQPP--PQLQHPSGYNPEEPPYPQQSYPPNPPRQ 370
Query: 181 PNQVSPPGPIPTQTFTN 231
P PPG P+Q + N
Sbjct: 371 PPSHPPPGSAPSQQYYN 387
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/94 (23%), Positives = 46/94 (48%)
Frame = +2
Query: 338 GTRAHAARTYAPARSSARQSTAPAAACNARRPSTSARTSHNATRSRRDSGTRLCYARLQE 517
G +A AA PA +A +S++ A+ +P + + +++ G R +++ E
Sbjct: 104 GKKAGAAAASYPAGGAALKSSSGTAS----KPKETKKRKQEEPSTQK--GARK--SKIDE 155
Query: 518 DTSPVSHVTDNEDDCRKDGPSPELENGGDRKGDS 619
+T T+N++ ++G E ENG D + ++
Sbjct: 156 ETKRNDEETENDNTEEENGNDEEDENGNDEEDEN 189
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 368 APARSSARQSTAPAAACNARRPSTSARTSHNATRSRRDSGTRLCYARLQEDTSP 529
+PA+ ++ T P+AA ++ P+ + S AT ++ G + A L D +P
Sbjct: 237 SPAKPKSKPVTKPSAARESKAPAPVSEHSSAATIDQQAEGYTIFVANLLMDATP 290
>At2g20690.1 68415.m02429 lumazine-binding family protein SP|P50854
Riboflavin synthase alpha chain (EC 2.5.1.9)
{Actinobacillus pleuropneumoniae}; contains Pfam profile
PF00677: Lumazine binding domain
Length = 271
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 9 SSTSIAADNVTRSRTCLLCTTVSSTKTHHRSYRLSKLFLFTRV 137
S T++ D V++S L T+ ++THHR LS +FT +
Sbjct: 26 SVTNLRFDCVSKSSKLSLKTSCGRSRTHHRRQNLSIRSVFTGI 68
>At3g45120.1 68416.m04870 hypothetical protein
Length = 106
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +2
Query: 437 TSART-SHNATRSRRDSGTRLCYARLQEDTSPVSHVTDNEDDCRKDGPSPELENGGDRKG 613
T+ +T +N +R+ D C + + V D +DD D + E G + G
Sbjct: 41 TTVKTLGNNVSRTHGDDAESDCVCDSVSNVDENNEVVDEQDDVEDDKTDEDEEEGDNEDG 100
Query: 614 DSH 622
D +
Sbjct: 101 DGY 103
>At4g30820.2 68417.m04368 cyclin-dependent kinase-activating kinase
assembly factor-related / CDK-activating kinase assembly
factor-related contains similarity to CDK-activating
kinase assembly factor MAT1 (RING finger protein MAT1)
(Menage a trois) (CDK7/cyclin H assembly factor)
(Swiss-Prot:P51950) [Marthasterias glacialis]
Length = 178
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 386 ARQSTAPAAACNARRPSTSARTSHN 460
A + TA AAC A+ P T A TS N
Sbjct: 83 AEELTAALAACKAKPPQTDADTSSN 107
>At4g30820.1 68417.m04367 cyclin-dependent kinase-activating kinase
assembly factor-related / CDK-activating kinase assembly
factor-related contains similarity to CDK-activating
kinase assembly factor MAT1 (RING finger protein MAT1)
(Menage a trois) (CDK7/cyclin H assembly factor)
(Swiss-Prot:P51950) [Marthasterias glacialis]
Length = 178
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 386 ARQSTAPAAACNARRPSTSARTSHN 460
A + TA AAC A+ P T A TS N
Sbjct: 83 AEELTAALAACKAKPPQTDADTSSN 107
>At4g16140.1 68417.m02445 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 164
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 163 PQPPAIPNQVSPPGPIPTQT 222
P PP P+ SPP P PT T
Sbjct: 45 PSPPPPPSNPSPPPPSPTTT 64
>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1344
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +1
Query: 151 PVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLPGVESR 267
P P PP + P GP + QHY PG+ ++
Sbjct: 24 PSSNPYPPPAASYPPPTGPFLHNQYDQQHYAP-PGISAQ 61
>At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family
protein contains Pfam profile PF03371: PRP38 family
Length = 355
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 512 QEDTSPVSHVTDNEDDCRKDGPSPELENGGDRKGDSH 622
+E+ ++ +++E D R+ P E E DR+ DSH
Sbjct: 194 KEENEGIADGSEDEMDQRRKSPERERERDRDRRRDSH 230
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +2
Query: 368 APARSSARQSTAPAAACNARRPSTSARTSHNATRSRRDSGTRLCYARLQEDTSPVSHVTD 547
AP +S S +P + N+ S A + + T + DS + + + TSP +
Sbjct: 8 APPTNST-SSPSPPSNTNSTTSSPPAPSPPSPTPPQGDSSS----SPPPDSTSPPAPQAP 62
Query: 548 NEDDCRKDGPSPELENGGDRKGD 616
N + + PSP + GG +G+
Sbjct: 63 NPPNSSNNSPSPPSQGGGGERGN 85
>At5g48360.1 68418.m05975 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 782
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 109 SQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIP 213
S+ + ES + P+ PP P + SPP P P
Sbjct: 30 SRRLLYDYESPLPLPLSPISPPFFPLESSPPSPPP 64
>At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibitor
family protein similar to extensin-like protein [Zea
mays] GI:5917666
Length = 264
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 133 ESEIDSPVGTPQP-PAIPNQVSPPGPIPTQTFTN 231
ES DSP TP P P + ++ P P + +T+
Sbjct: 26 ESRSDSPFSTPAPAPEVMKPIASPANSPAEIYTD 59
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 151 PVGTPQPPAIPNQVSPPGPIP 213
P G P PPA + +PP P P
Sbjct: 15 PAGAPPPPAAVSSAAPPHPPP 35
>At3g20570.1 68416.m02604 plastocyanin-like domain-containing
protein
Length = 203
Score = 27.9 bits (59), Expect = 6.4
Identities = 23/83 (27%), Positives = 32/83 (38%)
Frame = +2
Query: 377 RSSARQSTAPAAACNARRPSTSARTSHNATRSRRDSGTRLCYARLQEDTSPVSHVTDNED 556
R+ AR+ T A PS S S A +SR G L + S + D D
Sbjct: 24 RAYAREFTV-GGATGWTVPSGSQVYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYD 82
Query: 557 DCRKDGPSPELENGGDRKGDSHS 625
C D P+ + +G +HS
Sbjct: 83 SCNTDSPTAKFADGKTSVTLNHS 105
>At2g09865.1 68415.m01022 hypothetical protein
Length = 339
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +1
Query: 133 ESEIDSPVGTPQPP----AIPNQVSPPGPIPTQTFTNQHYV 243
E E PVG P+ A+P ++ P PIP + + Q Y+
Sbjct: 259 EDEFIDPVGGPRVGSSSLALPYELPSPTPIPIEPYVFQQYI 299
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +1
Query: 151 PVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLPGVES 264
P +P PP+ P PP P P + Y P +S
Sbjct: 51 PPPSPPPPSTPTTACPPPPSPPSSGGGSSYYYPPPSQS 88
>At5g38690.1 68418.m04678 expressed protein
Length = 572
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +2
Query: 407 AAACNARRPSTSARTSHNATRSRRDSGTRLCYARLQEDTSPVSHVTDNEDDCRKDGPSPE 586
A A A+ T H+A SR ++ T+ Y+ +Q +S + DD + P E
Sbjct: 443 AQAVKAKNGIPLLITEHDAIVSRINAETQEVYSEMQNAIDMLSKKSQGSDDAVRTNP-VE 501
Query: 587 LENGG 601
L++ G
Sbjct: 502 LDDNG 506
>At4g10640.1 68417.m01738 calmodulin-binding family protein contains
IQ calmodulin-binding motif, Pfam:PF00612
Length = 423
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/66 (25%), Positives = 24/66 (36%)
Frame = +2
Query: 332 CTGTRAHAARTYAPARSSARQSTAPAAACNARRPSTSARTSHNATRSRRDSGTRLCYARL 511
C +R+ R+ +P + S P ART R + RLCYA
Sbjct: 320 CRASRSVMVRSASPRIPCSPSSMQPNYMSATESAKAKARTQSTPRRRPMTAKKRLCYAEE 379
Query: 512 QEDTSP 529
+ SP
Sbjct: 380 ESLRSP 385
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 27.5 bits (58), Expect = 8.5
Identities = 24/77 (31%), Positives = 32/77 (41%)
Frame = +2
Query: 344 RAHAARTYAPARSSARQSTAPAAACNARRPSTSARTSHNATRSRRDSGTRLCYARLQEDT 523
R A APAR+ + AA S SA SH + + GT A Q D
Sbjct: 299 RVQGANAGAPARAGDLSAAVTAARNTLAVSSASALASH-PSLPEVNIGTSA--AAGQPDN 355
Query: 524 SPVSHVTDNEDDCRKDG 574
+ V+HV+ + R DG
Sbjct: 356 NQVAHVSRPSEVVRPDG 372
>At1g75080.2 68414.m08720 brassinosteroid signalling positive
regulator (BZR1) identical to to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 336
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 374 ARSSARQSTAPAAACNARRPSTSARTSHNATRSRRDSGTRLCYA--RLQEDTSPVSHVTD 547
A S++ + A AAA R+PS R ++ RR + Y R Q D + H +
Sbjct: 6 ATSTSAAAAAAAAAAARRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGDYNLPKHCDN 65
Query: 548 NE 553
NE
Sbjct: 66 NE 67
>At1g75080.1 68414.m08719 brassinosteroid signalling positive
regulator (BZR1) identical to to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 336
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 374 ARSSARQSTAPAAACNARRPSTSARTSHNATRSRRDSGTRLCYA--RLQEDTSPVSHVTD 547
A S++ + A AAA R+PS R ++ RR + Y R Q D + H +
Sbjct: 6 ATSTSAAAAAAAAAAARRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGDYNLPKHCDN 65
Query: 548 NE 553
NE
Sbjct: 66 NE 67
>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAC domain protein NAM GB: AAD17313
GI:4325282 from [Arabidopsis thaliana]
Length = 429
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 1 PGYP-LRPLPPITLQEVEHAYFAQQYPQQRPITEVIGSQ 114
PG+ + +P + + E H Y AQ+ P+Q+ +VI SQ
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQSKEKVISSQ 371
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,051,199
Number of Sequences: 28952
Number of extensions: 272531
Number of successful extensions: 1403
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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