Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0573
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom... 63 4e-11
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 28 1.4
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 2.5
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 26 4.3
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 4.3
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 5.7
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 5.7
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 25 7.5
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 25 9.9
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.9
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 25 9.9
>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 62.9 bits (146), Expect = 4e-11
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +3
Query: 264 TIELSEK--FQCRGQEFYDAMTRIEMVTAFTQGHVKLDPEKGGKFALFGGNVTGEFKELV 437
T ++SE F E Y V A+++ +LD G F+LF GNV G+F L
Sbjct: 205 TADISENYTFDAPANELYATFLDPARVAAWSRAPPQLDVRPQGAFSLFHGNVVGKFLVLE 264
Query: 438 PGKRIVQYWRYKQWPEQHYSEVT 506
K+IVQ WR WP HY+E+T
Sbjct: 265 ENKKIVQTWRLSSWPTGHYAEIT 287
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 515 EEKDDHTLVRLKQDLVPVAEVEKTRDNWQRYYFDSIKRAFGFGA 646
++ D +T +R+ VP+ E E + N Q YY IK FGFGA
Sbjct: 291 DQADSYTTLRMIMKGVPIGEEEVVQGNIQDYYIRPIKTVFGFGA 334
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 56 GGKRSENNSKSIFEV*KKSSQKASFCQRKANLPSNLTMYQQSQVDLIKKS 205
GG S + + IF++ + S + S KA++P+N+ Q + ++KS
Sbjct: 41 GGNESVSVEQEIFDLSQLSERPVSETVSKASIPTNINGLSQVKPSALEKS 90
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 397 YLVVMLLENLKNSSQERESFNIGDISNGLNNTTQK 501
+L++ + +N+ N+ QER+ + + NNTT K
Sbjct: 196 HLILQINKNIYNARQERKKSKLSSNNPSDNNTTMK 230
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 649 ERSKSESTLNTVKVVSLPVVTGLLNLSDRH 560
E ++ST+ VK+ P++ G +N D H
Sbjct: 11 EELSAKSTVQNVKISEAPILDGKVNNEDSH 40
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 196 KKINMNP--IISPQTNKVGCKLIQRQLNYQRNFNVEDKNFM 312
++I M P I+SPQ+NK ++Q L R F++ D NF+
Sbjct: 508 QEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRD-NFL 547
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 518 EKDDHTLVRLKQDLVPVAEVEKTRDNWQRYYFDSIKRAFGFGA 646
+K H + RLKQ P+++++ + YY S R +G A
Sbjct: 567 KKYGHKVWRLKQHDTPLSQIQAVTRHHSEYYGMSDPRKYGQAA 609
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 418 ENLKNSSQERESFNIGDISNGLNNTTQK 501
++L+ SS R+S ++GDI N ++ TQK
Sbjct: 338 KSLRLSSAARQSRSVGDIVNYMSVDTQK 365
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 332 DGDCLHSGSCKARSRERWKICLIWW*C 412
DG+ LH C+ S + I L +W C
Sbjct: 126 DGEVLHRWECEVDSNNKTTIDLKYWYC 152
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 9.9
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +1
Query: 100 LKEEFSKGLILPKKGESSVKPDNVSTITSGFNKKINMNPIISPQTN--KVGCK-LIQRQL 270
L E+ + + +P K S +KP + + K+INM P IS N + K LI+ ++
Sbjct: 377 LMEKEKELISVPSK--SDIKPKHYRKLLKIIEKRINMYPKISDPKNFDEENAKTLIEGEI 434
Query: 271 NYQRNFNVEDK 303
+ +N + + K
Sbjct: 435 DILQNLSAKVK 445
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 192 KSTCDC*YIVRFDGRFAFLWQNEAF*ELFF*TSNILLELFSDLF 61
K TCDC Y + F G F +Q F ++ + L+ F +LF
Sbjct: 1124 KPTCDCVYDISF-GSLTFYFQKSYFNAIY--DFLLKLKRFQELF 1164
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/50 (22%), Positives = 25/50 (50%)
Frame = +1
Query: 61 EEIRKQLQEYIRSLKEEFSKGLILPKKGESSVKPDNVSTITSGFNKKINM 210
EE+ K ++E +S++ P + ES+ DN+ + +++ N+
Sbjct: 317 EEVEKAIEEETKSVQANEENETEKPSQTESTTNNDNIKAPSESSSEESNI 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,837
Number of Sequences: 5004
Number of extensions: 53823
Number of successful extensions: 196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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