BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0573 (673 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom... 63 4e-11 SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 28 1.4 SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 2.5 SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 26 4.3 SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 4.3 SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 5.7 SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 5.7 SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 25 7.5 SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 25 9.9 SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.9 SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 25 9.9 >SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 336 Score = 62.9 bits (146), Expect = 4e-11 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Frame = +3 Query: 264 TIELSEK--FQCRGQEFYDAMTRIEMVTAFTQGHVKLDPEKGGKFALFGGNVTGEFKELV 437 T ++SE F E Y V A+++ +LD G F+LF GNV G+F L Sbjct: 205 TADISENYTFDAPANELYATFLDPARVAAWSRAPPQLDVRPQGAFSLFHGNVVGKFLVLE 264 Query: 438 PGKRIVQYWRYKQWPEQHYSEVT 506 K+IVQ WR WP HY+E+T Sbjct: 265 ENKKIVQTWRLSSWPTGHYAEIT 287 Score = 39.5 bits (88), Expect = 4e-04 Identities = 18/44 (40%), Positives = 25/44 (56%) Frame = +2 Query: 515 EEKDDHTLVRLKQDLVPVAEVEKTRDNWQRYYFDSIKRAFGFGA 646 ++ D +T +R+ VP+ E E + N Q YY IK FGFGA Sbjct: 291 DQADSYTTLRMIMKGVPIGEEEVVQGNIQDYYIRPIKTVFGFGA 334 >SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1000 Score = 27.9 bits (59), Expect = 1.4 Identities = 14/50 (28%), Positives = 27/50 (54%) Frame = +2 Query: 56 GGKRSENNSKSIFEV*KKSSQKASFCQRKANLPSNLTMYQQSQVDLIKKS 205 GG S + + IF++ + S + S KA++P+N+ Q + ++KS Sbjct: 41 GGNESVSVEQEIFDLSQLSERPVSETVSKASIPTNINGLSQVKPSALEKS 90 >SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|Schizosaccharomyces pombe|chr 3|||Manual Length = 636 Score = 27.1 bits (57), Expect = 2.5 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = +1 Query: 397 YLVVMLLENLKNSSQERESFNIGDISNGLNNTTQK 501 +L++ + +N+ N+ QER+ + + NNTT K Sbjct: 196 HLILQINKNIYNARQERKKSKLSSNNPSDNNTTMK 230 >SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1|||Manual Length = 197 Score = 26.2 bits (55), Expect = 4.3 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = -1 Query: 649 ERSKSESTLNTVKVVSLPVVTGLLNLSDRH 560 E ++ST+ VK+ P++ G +N D H Sbjct: 11 EELSAKSTVQNVKISEAPILDGKVNNEDSH 40 >SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 1752 Score = 26.2 bits (55), Expect = 4.3 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Frame = +1 Query: 196 KKINMNP--IISPQTNKVGCKLIQRQLNYQRNFNVEDKNFM 312 ++I M P I+SPQ+NK ++Q L R F++ D NF+ Sbjct: 508 QEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRD-NFL 547 >SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosaccharomyces pombe|chr 1|||Manual Length = 611 Score = 25.8 bits (54), Expect = 5.7 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +2 Query: 518 EKDDHTLVRLKQDLVPVAEVEKTRDNWQRYYFDSIKRAFGFGA 646 +K H + RLKQ P+++++ + YY S R +G A Sbjct: 567 KKYGHKVWRLKQHDTPLSQIQAVTRHHSEYYGMSDPRKYGQAA 609 >SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1463 Score = 25.8 bits (54), Expect = 5.7 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = +1 Query: 418 ENLKNSSQERESFNIGDISNGLNNTTQK 501 ++L+ SS R+S ++GDI N ++ TQK Sbjct: 338 KSLRLSSAARQSRSVGDIVNYMSVDTQK 365 >SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 209 Score = 25.4 bits (53), Expect = 7.5 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +2 Query: 332 DGDCLHSGSCKARSRERWKICLIWW*C 412 DG+ LH C+ S + I L +W C Sbjct: 126 DGEVLHRWECEVDSNNKTTIDLKYWYC 152 >SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 461 Score = 25.0 bits (52), Expect = 9.9 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%) Frame = +1 Query: 100 LKEEFSKGLILPKKGESSVKPDNVSTITSGFNKKINMNPIISPQTN--KVGCK-LIQRQL 270 L E+ + + +P K S +KP + + K+INM P IS N + K LI+ ++ Sbjct: 377 LMEKEKELISVPSK--SDIKPKHYRKLLKIIEKRINMYPKISDPKNFDEENAKTLIEGEI 434 Query: 271 NYQRNFNVEDK 303 + +N + + K Sbjct: 435 DILQNLSAKVK 445 >SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3071 Score = 25.0 bits (52), Expect = 9.9 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -2 Query: 192 KSTCDC*YIVRFDGRFAFLWQNEAF*ELFF*TSNILLELFSDLF 61 K TCDC Y + F G F +Q F ++ + L+ F +LF Sbjct: 1124 KPTCDCVYDISF-GSLTFYFQKSYFNAIY--DFLLKLKRFQELF 1164 >SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces pombe|chr 2|||Manual Length = 526 Score = 25.0 bits (52), Expect = 9.9 Identities = 11/50 (22%), Positives = 25/50 (50%) Frame = +1 Query: 61 EEIRKQLQEYIRSLKEEFSKGLILPKKGESSVKPDNVSTITSGFNKKINM 210 EE+ K ++E +S++ P + ES+ DN+ + +++ N+ Sbjct: 317 EEVEKAIEEETKSVQANEENETEKPSQTESTTNNDNIKAPSESSSEESNI 366 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,705,837 Number of Sequences: 5004 Number of extensions: 53823 Number of successful extensions: 196 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 191 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 196 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 307866294 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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