Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0573
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847     77   1e-14
04_04_1643 + 35010877-35010910,35011002-35011147,35011316-350114...    30   1.5  
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990...    30   1.9  
04_04_0600 + 26526667-26527692                                         29   3.4  
02_02_0248 - 8267332-8268276,8268338-8269288                           29   3.4  
01_03_0056 + 12089404-12090300,12090429-12090581,12090999-120911...    29   4.5  
09_01_0137 + 2063881-2063934,2066218-2066448,2066656-2067249,206...    28   5.9  
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557...    28   7.8  

>08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847
          Length = 426

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 33/79 (41%), Positives = 51/79 (64%)
 Frame = +3

Query: 261 KTIELSEKFQCRGQEFYDAMTRIEMVTAFTQGHVKLDPEKGGKFALFGGNVTGEFKELVP 440
           KTIE++EKF CR ++ Y+ +        FTQ + ++  E GG+F+LF G+++G  +EL  
Sbjct: 220 KTIEMTEKFYCRAKDMYEILMDENRWKGFTQSNARISREVGGQFSLFDGSISGVNEELQE 279

Query: 441 GKRIVQYWRYKQWPEQHYS 497
           GK IVQ WR+  WP+  +S
Sbjct: 280 GKLIVQKWRFGSWPDGVHS 298


>04_04_1643 +
           35010877-35010910,35011002-35011147,35011316-35011441,
           35012418-35012558
          Length = 148

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 160 PDNVSTITSGFNKKINMNPIISPQTNKVGCKLIQRQLNYQRNFNVED 300
           PD   T+   F+ +INM P ++P T  V  K      N+QR + +E+
Sbjct: 79  PDKPPTVR--FHSRINM-PCVNPDTGLVESKKFHMLANWQREYTMEN 122


>04_04_0596 -
           26497863-26497913,26498010-26498081,26499015-26499093,
           26499440-26499553,26499822-26499871,26500353-26500398,
           26501100-26501719
          Length = 343

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 27  ESESIYASCRAGRDPKTTPRVYSKSKRRVLKRPHSAKERR 146
           ESES Y+ C AG + +T      + +RR  +R    +E R
Sbjct: 109 ESESSYSDCSAGSESETDSEEERRRRRRRRRRKEREEEER 148


>04_04_0600 + 26526667-26527692
          Length = 341

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 354 GHVKLDPEKGGKFALFGGNVTGEFKELVPGKRIVQYWRYKQWP 482
           G VK    +  +  L G NV G+ +EL PG   + +W  K  P
Sbjct: 263 GEVKAVEHRWNQHGLGGDNVAGQCRELHPGPVSLLHWSGKGKP 305


>02_02_0248 - 8267332-8268276,8268338-8269288
          Length = 631

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 347 HSGSCKARSRERWKICLIWW*CYWRI*RTRPRKE 448
           H G CK + + + +IC + W   WR   +R + E
Sbjct: 304 HRGHCKLQRQSQGRICALLWLADWRFVTSRIQPE 337


>01_03_0056 +
           12089404-12090300,12090429-12090581,12090999-12091157,
           12091575-12091734,12092185-12092201,12092682-12092798,
           12092914-12093303
          Length = 630

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +2

Query: 545 LKQDLVPVAEVEKTRDNWQRYYFDSIKRAFG---FGAFCD 655
           L  + VP   ++KT  NW  + FD   R F    FGA  D
Sbjct: 450 LMSEFVPGFPIDKTDPNWSNFLFDEPTRKFNLIDFGAARD 489


>09_01_0137 +
           2063881-2063934,2066218-2066448,2066656-2067249,
           2067980-2068639,2068910-2069164
          Length = 597

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 669 TSVHGSQNAPNPKARLILSK*YRCQL-SRVFSTSATGTR 556
           TS+   +N P P   +I S+  RC+L S  + T+ TGT+
Sbjct: 161 TSMEDVKNCPGPHPPIIESRASRCELQSAPWPTNRTGTK 199


>03_05_0434 +
           24252994-24253449,24254791-24254877,24255450-24255748,
           24256146-24256383,24256907-24257441,24257527-24257729,
           24258311-24258520
          Length = 675

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 515 EEKDDHT-LVRLKQDLVPVAEVEKTRDN 595
           E K DH+ L   K+DL+PV+E E T DN
Sbjct: 430 EAKVDHSDLTSEKEDLLPVSEKECTFDN 457


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,808,098
Number of Sequences: 37544
Number of extensions: 320998
Number of successful extensions: 761
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)