BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0573 (673 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81030-6|CAB02710.1| 342|Caenorhabditis elegans Hypothetical pr... 69 3e-12 U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fb... 30 1.7 AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical ... 29 2.3 Z72513-3|CAA96671.2| 127|Caenorhabditis elegans Hypothetical pr... 29 4.0 Z81494-4|CAB04050.2| 319|Caenorhabditis elegans Hypothetical pr... 28 6.9 >Z81030-6|CAB02710.1| 342|Caenorhabditis elegans Hypothetical protein C01G10.8 protein. Length = 342 Score = 68.9 bits (161), Expect = 3e-12 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Frame = +3 Query: 258 TKTIELSEKFQCRGQEFYDAMTRIEMVTAFTQGHV-KLDPEKGGKFALFGGNVTGEFKEL 434 TK + S+ ++ ++A+T + V +T + + + ++GG FALFG NVTG F+++ Sbjct: 210 TKEVSTSDTYKATPDRVFEALTETQFVRGWTNNSIGEWNFKEGGSFALFGENVTGTFEKI 269 Query: 435 VPGKRIVQYWRYKQWPEQHYSEVTLILK 518 P K IV+ WR K++P H++ + LK Sbjct: 270 EPNKEIVKKWRLKKYPNNHHATIHFQLK 297 Score = 44.0 bits (99), Expect = 1e-04 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Frame = +1 Query: 1 IKSNGDEAQRVKAFMHHVGREEIRKQLQEYIRSLKEEFSKGLILPKKGESSVKPDNVST- 177 + NG A +++ ++ +I+ + YIR LKEEFSKGLILP VKP V+T Sbjct: 124 LSGNGPMAHQIRQVLNKSFIAKIQDVMGIYIRELKEEFSKGLILP---TDKVKPQVVTTG 180 Query: 178 ITSGFNKKINMNPIIS 225 TS +K+ N +++ Sbjct: 181 KTSVVDKRQFQNTVVA 196 Score = 29.9 bits (64), Expect = 1.7 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +2 Query: 560 VPVAEVEKTRDNWQRYYFDSIKRAFGF 640 VP E+T+ RYY SI R FGF Sbjct: 312 VPTHLAEETQQGLDRYYLSSIGRTFGF 338 >U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fbf) domain-containingprotein 9 protein. Length = 703 Score = 29.9 bits (64), Expect = 1.7 Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Frame = +1 Query: 25 QRVKAFMHHVGREEIRKQLQ-EYIRSLKEEFSKGLILPKKGESSVKPDNVSTITSGFNKK 201 Q+ ++ + EI +++ + ++ +K++ +I +K V+P+ + I F K Sbjct: 433 QKALEYVEEKYQHEILGEMEGQVLKCVKDQNGNHVI--QKVIERVEPERLQFIIDAFTKN 490 Query: 202 INMNPIISPQTNKVGCKLIQRQLNY 276 N + + + + GC++IQR L Y Sbjct: 491 -NSDNVYTLSVHPYGCRVIQRVLEY 514 >AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical protein Y55B1BR.1 protein. Length = 543 Score = 29.5 bits (63), Expect = 2.3 Identities = 12/45 (26%), Positives = 25/45 (55%) Frame = +1 Query: 127 ILPKKGESSVKPDNVSTITSGFNKKINMNPIISPQTNKVGCKLIQ 261 +LP++ + + KPD IT GF +++++ P + N ++ Q Sbjct: 149 VLPQRQKPTPKPDKEIRITVGFGEQVDLEPTFICKWNHARLRVAQ 193 >Z72513-3|CAA96671.2| 127|Caenorhabditis elegans Hypothetical protein T04F3.4 protein. Length = 127 Score = 28.7 bits (61), Expect = 4.0 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +2 Query: 515 EEKDDHTLVRLKQDLVPVAEVEKTRDNWQRYYFDSI 622 EEK+ H +KQ L EVEK + QR+++ S+ Sbjct: 25 EEKEVHDEEHIKQHLENKIEVEKLTEEQQRFHYFSM 60 >Z81494-4|CAB04050.2| 319|Caenorhabditis elegans Hypothetical protein F02E9.3 protein. Length = 319 Score = 27.9 bits (59), Expect = 6.9 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +1 Query: 67 IRKQLQEYIRSLKEEFSKGLILPKKGESSVKPDNVSTITS 186 ++KQL E RSLK + K E KP ++ TI S Sbjct: 278 MKKQLDEIARSLKSSKKSRKSMKSKKEKKSKPASLKTIYS 317 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,727,940 Number of Sequences: 27780 Number of extensions: 290005 Number of successful extensions: 895 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 869 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 895 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1518563232 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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