Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0573
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-6|CAB02710.1|  342|Caenorhabditis elegans Hypothetical pr...    69   3e-12
U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fb...    30   1.7  
AC024824-3|AAK85501.1|  543|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z72513-3|CAA96671.2|  127|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>Z81030-6|CAB02710.1|  342|Caenorhabditis elegans Hypothetical
           protein C01G10.8 protein.
          Length = 342

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
 Frame = +3

Query: 258 TKTIELSEKFQCRGQEFYDAMTRIEMVTAFTQGHV-KLDPEKGGKFALFGGNVTGEFKEL 434
           TK +  S+ ++      ++A+T  + V  +T   + + + ++GG FALFG NVTG F+++
Sbjct: 210 TKEVSTSDTYKATPDRVFEALTETQFVRGWTNNSIGEWNFKEGGSFALFGENVTGTFEKI 269

Query: 435 VPGKRIVQYWRYKQWPEQHYSEVTLILK 518
            P K IV+ WR K++P  H++ +   LK
Sbjct: 270 EPNKEIVKKWRLKKYPNNHHATIHFQLK 297



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
 Frame = +1

Query: 1   IKSNGDEAQRVKAFMHHVGREEIRKQLQEYIRSLKEEFSKGLILPKKGESSVKPDNVST- 177
           +  NG  A +++  ++     +I+  +  YIR LKEEFSKGLILP      VKP  V+T 
Sbjct: 124 LSGNGPMAHQIRQVLNKSFIAKIQDVMGIYIRELKEEFSKGLILP---TDKVKPQVVTTG 180

Query: 178 ITSGFNKKINMNPIIS 225
            TS  +K+   N +++
Sbjct: 181 KTSVVDKRQFQNTVVA 196



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 560 VPVAEVEKTRDNWQRYYFDSIKRAFGF 640
           VP    E+T+    RYY  SI R FGF
Sbjct: 312 VPTHLAEETQQGLDRYYLSSIGRTFGF 338


>U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 9 protein.
          Length = 703

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = +1

Query: 25  QRVKAFMHHVGREEIRKQLQ-EYIRSLKEEFSKGLILPKKGESSVKPDNVSTITSGFNKK 201
           Q+   ++    + EI  +++ + ++ +K++    +I  +K    V+P+ +  I   F K 
Sbjct: 433 QKALEYVEEKYQHEILGEMEGQVLKCVKDQNGNHVI--QKVIERVEPERLQFIIDAFTKN 490

Query: 202 INMNPIISPQTNKVGCKLIQRQLNY 276
            N + + +   +  GC++IQR L Y
Sbjct: 491 -NSDNVYTLSVHPYGCRVIQRVLEY 514


>AC024824-3|AAK85501.1|  543|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.1 protein.
          Length = 543

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 127 ILPKKGESSVKPDNVSTITSGFNKKINMNPIISPQTNKVGCKLIQ 261
           +LP++ + + KPD    IT GF +++++ P    + N    ++ Q
Sbjct: 149 VLPQRQKPTPKPDKEIRITVGFGEQVDLEPTFICKWNHARLRVAQ 193


>Z72513-3|CAA96671.2|  127|Caenorhabditis elegans Hypothetical
           protein T04F3.4 protein.
          Length = 127

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 515 EEKDDHTLVRLKQDLVPVAEVEKTRDNWQRYYFDSI 622
           EEK+ H    +KQ L    EVEK  +  QR+++ S+
Sbjct: 25  EEKEVHDEEHIKQHLENKIEVEKLTEEQQRFHYFSM 60


>Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical
           protein F02E9.3 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 67  IRKQLQEYIRSLKEEFSKGLILPKKGESSVKPDNVSTITS 186
           ++KQL E  RSLK        +  K E   KP ++ TI S
Sbjct: 278 MKKQLDEIARSLKSSKKSRKSMKSKKEKKSKPASLKTIYS 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,727,940
Number of Sequences: 27780
Number of extensions: 290005
Number of successful extensions: 895
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)