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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0572
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   180   1e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    98   1e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    97   2e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    93   3e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    63   5e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    62   1e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    52   1e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    42   1e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    38   0.001
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    31   0.13 
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    31   0.13 
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    30   0.30 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    28   1.2  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    27   2.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.7  
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    26   4.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   4.9  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    25   8.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   8.6  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    25   8.6  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  180 bits (439), Expect = 1e-46
 Identities = 80/88 (90%), Positives = 83/88 (94%)
 Frame = +2

Query: 245 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 424
           G +DSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48  GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107

Query: 425 APLNPKANREKMTQIMFETFNTPAMYVA 508
           APLNPK+NREKMTQI+FETFN PA YVA
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVA 135



 Score =  151 bits (366), Expect = 1e-37
 Identities = 71/77 (92%), Positives = 76/77 (98%)
 Frame = +1

Query: 508 LQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 687
           +QAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL E
Sbjct: 136 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILME 195

Query: 688 RGYSFTTTAEREIVRDI 738
           RGY+F+TTAEREIVRDI
Sbjct: 196 RGYTFSTTAEREIVRDI 212



 Score =  102 bits (244), Expect = 6e-23
 Identities = 44/49 (89%), Positives = 48/49 (97%)
 Frame = +3

Query: 108 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 254
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQK
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQK 50


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 40/93 (43%), Positives = 65/93 (69%)
 Frame = +2

Query: 230 RDGRYGTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 409
           + G    +D  VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P    
Sbjct: 43  KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102

Query: 410 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVA 508
           +LLTE P+NP ANREKM + MFE +    +YVA
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVA 135



 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 43/77 (55%), Positives = 59/77 (76%)
 Frame = +1

Query: 508 LQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 687
           +QAVLSLYA G ++G+V+DSGDGV+H VP+YE   L H + RLD+AGRD T YL+ +L  
Sbjct: 136 IQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLR 195

Query: 688 RGYSFTTTAEREIVRDI 738
           +GY+F  TA+ E VR++
Sbjct: 196 KGYAFNRTADFETVREM 212



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +3

Query: 114 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 218
           E A +V+DNG+G  K G+A D+ PR  FPSIVGRP
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 43/77 (55%), Positives = 62/77 (80%)
 Frame = +1

Query: 508 LQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 687
           LQ VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL   L +
Sbjct: 141 LQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRK 200

Query: 688 RGYSFTTTAEREIVRDI 738
            G+   ++AE+EIVR+I
Sbjct: 201 SGHELVSSAEKEIVREI 217



 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 42/90 (46%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
 Frame = +2

Query: 251 EDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEA 427
           +D +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L   PEEHP+LLTE 
Sbjct: 54  KDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEP 113

Query: 428 PLNPKANREKMTQIMFETFNTPAMYVASKP 517
           PL    N+EK+ +  +ET N PA+  + +P
Sbjct: 114 PLANIRNKEKIAEYFYETLNVPALSFSLQP 143



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = +3

Query: 126 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKTL 260
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM    QK +
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDM 56


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = +2

Query: 254 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 430
           D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE P
Sbjct: 73  DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132

Query: 431 LNPKANREKMTQIMFETFNTPAMYVA 508
           LNP  NRE   +IMFE+FN   +Y+A
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIA 158



 Score = 58.8 bits (136), Expect = 8e-10
 Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 10/81 (12%)
 Frame = +1

Query: 508 LQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 663
           +QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +  +I  + LAGRD+T 
Sbjct: 159 VQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTY 218

Query: 664 YLMKILTERGY--SFTTTAER 720
           ++  +L +R    S   TAER
Sbjct: 219 FVQSLLRDRNEPDSSLKTAER 239



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 14/28 (50%), Positives = 23/28 (82%)
 Frame = +3

Query: 126 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 209
           +++DNG+G  K G+AG+DAP  VFP+++
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 28/73 (38%), Positives = 41/73 (56%)
 Frame = +2

Query: 296 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 475
           + +K  I +G V NWD    +W +    +L+  P EHP+L+TE   NP  NR K  + MF
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122

Query: 476 ETFNTPAMYVASK 514
           E+   PA Y+A +
Sbjct: 123 ESLRCPATYLAKQ 135



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 111 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 212
           +EV+A+V+D GS   + GF+G+D P+ V PS  G
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42



 Score = 31.9 bits (69), Expect = 0.099
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +1

Query: 511 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 690
           Q   + +ASG+ T  ++D G   S    IY+G+ L         +G  + D L + L ++
Sbjct: 135 QETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDK 194

Query: 691 GY 696
            +
Sbjct: 195 NF 196


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
 Frame = +2

Query: 230 RDGRYGTEDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 406
           RD +     + VG++   + G  ++ + P E  +++NWD ME++  +TF  +L +   EH
Sbjct: 58  RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116

Query: 407 PVLLTEAPLNPKANREKMTQIMFETFNTPAM 499
           P+ +TE   NP   R  MT+++FE +N P++
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSV 147



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 126 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 221
           LV+DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 544 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 702
           ++GIVL+ G+  SH +P+  G  +     R+   G   + YL+K+   +  SF
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSF 217


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
 Frame = +2

Query: 254 DSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 427
           + YV DE Q    I  + +K    +GI+ +W+     W      +L+V P E+ +++TE 
Sbjct: 50  NKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEP 109

Query: 428 PLNPKANREKMTQIMFETFNTPAMYVASK 514
             NP++ R+++ +  FE  + PA Y+  +
Sbjct: 110 SWNPQSVRQQIMEAAFEQLHVPAFYLTKQ 138



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 111 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 212
           EE+ +LV+D GS   + G+AG+++P  + PS  G
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 37/62 (59%)
 Frame = +1

Query: 553 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 732
           +V+DSG   +H +P+ +      A+ R+D+ G+ LT+YL ++++ R Y+     E  IV 
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216

Query: 733 DI 738
           +I
Sbjct: 217 EI 218


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = +1

Query: 511 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 687
           + ++ LYA G   G+V+D G   +   PI +G  +  A  +L L GR +T +L  +L E
Sbjct: 183 EPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRE 241



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +2

Query: 311 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 478
           PI+ G V +W+ ++  W H  Y+ L   P +    +PV L         +RE  TQ  FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171

Query: 479 TFNTPAMYVASKP 517
               P   +A +P
Sbjct: 172 ECQVPGFTIAYEP 184


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +2

Query: 371  FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTP 493
            +Y  L    E+HP+LLT+  A L P+ +  ++ +I  ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 13/64 (20%), Positives = 34/64 (53%)
 Frame = +1

Query: 511 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 690
           +++ + + +G +   V+D G   +    + EG  +P++ ++++  G D+T   MK+L   
Sbjct: 280 ESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRS 339

Query: 691 GYSF 702
            + +
Sbjct: 340 HFPY 343


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = +2

Query: 374 YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVASKPCSRCTRPVVPPV 553
           Y+EL +A +E P  L   P  PK   +    +     N  A +   KP S+ TRP +P  
Sbjct: 23  YSELPIAYQEIP--LQSLPPYPKVASKLKGVVAGGKENNIASF--QKPSSKATRPYIPSY 78

Query: 554 SCWTPATVSPTPCP 595
           +  T  +V P P P
Sbjct: 79  TRLT-YSVPPLPIP 91


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 515 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 619
           PC+     + PPV+C TP    P  C   +  H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 515 PCSRCTRPVVPPVSCWTPATVSPTPCPST 601
           P SR T+P+    S  +P  VSP   PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -2

Query: 241 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 107
           PT+ P     P    N     S P         PL+TTN  TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 536  PVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 628
            P VP  S   P+   P P PS+     P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 413 LLTEAPLNPKANREKMTQIMFETFN 487
           +L  APL+ +   +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 247 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 155
           P+PT  P    LPT   NT +    P+ PAL
Sbjct: 74  PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +1

Query: 406 PSPAH*GSPQPQGQQ----REDDPDHVRNIQHARHVRRLQAVLSLYASGRTTGIVLD 564
           P P H G+   +G++    RED P++ R ++  +  + +  +   Y     TG+  D
Sbjct: 312 PKPVH-GTSNGKGKKNPVLREDQPEYQRAVRRMQRKKEIDLMDEDYLPSLLTGVTKD 367


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +2

Query: 509  SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTRDT-HSPTPSCVWT*PV 649
            S+  S  T P  PP +  T   PA  SP P P   +T H PT S     PV
Sbjct: 899  SRTSSVSTLPPPPPTASMTASAPAIASPPP-PKVGETYHPPTASGTRVPPV 948


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -3

Query: 273 SSPT*ESSVPYRPSRPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLL 112
           SSP+ +SS     S   G    RSR    + H +   RP +  S  + P   +L
Sbjct: 61  SSPSIKSSSQNGKSSSKGLGGMRSRVFSSQHHGVYHTRPASLHSRTMAPQHTIL 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,175
Number of Sequences: 5004
Number of extensions: 68923
Number of successful extensions: 247
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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