Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0571
         (754 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        28   0.070
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   1.5  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    23   2.0  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   6.0  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   6.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.0  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   8.0  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 0.070
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 662 KKRKRRTSFTPQALELLNAHFERNTHP 742
           K+R+ RT+FT   L+ L   FER  +P
Sbjct: 219 KQRRSRTTFTAHQLDELEKAFERTQYP 245


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 387 WDQLRRHQGIREGLQTATTWSGTYADPSRPSPVGH 491
           W Q RR +  R+ +  A  ++  Y DP+  + + H
Sbjct: 118 WFQNRRMKDKRQRMAIAWPYAAVYTDPAFAASIFH 152


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 21/72 (29%), Positives = 27/72 (37%)
 Frame = +2

Query: 539 DITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFIGMEPSKKRKRRTSFTPQALELLNA 718
           D  P SA    P +     + +    S   HLTD       KKRKRR  F+      L  
Sbjct: 1   DNLPSSASN--PAVSERDPDEDNSEDSKDPHLTDQQA-SGHKKRKRRVLFSKAQTYELER 57

Query: 719 HFERNTHPSGTE 754
            F +  + S  E
Sbjct: 58  RFRQQRYLSAPE 69


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 470 TWVCVSPRPSRRSLK 426
           TW C++ R  RR +K
Sbjct: 57  TWQCINQRCERRHIK 71


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 256 IPSPHAPVKLSPGSVKSPSHDDADL 330
           +P P   V   P S K+P+    DL
Sbjct: 393 VPQPVEEVTQKPSSTKAPAPPSRDL 417


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 518 ICRFEKLDITPKSAQKIKPVLERWMKEAEERYASG 622
           +C F  L +TP   + +   +  ++++  ERY SG
Sbjct: 8   LCAF--LILTPTDQRVVTRTIPSFLRDDVERYPSG 40


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 580 EHRFDFLRTFW 548
           + R DFLRT+W
Sbjct: 208 DFRRDFLRTYW 218


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 691 TSGPRTAQRALRKEHPSIW 747
           T+  R+ +R L+KE+P IW
Sbjct: 81  TAAYRSIKR-LKKEYPKIW 98


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,363
Number of Sequences: 336
Number of extensions: 3483
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)