Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0571
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    29   0.71 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.2  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    28   1.6  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    27   3.8  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    26   5.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.6  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    26   6.6  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    26   6.6  

>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 613 RIRSKSSDGLHWNGAEQKAQTANIVHTSGPRTAQRALRKE 732
           R+ S+ +D    +G  Q ++  N+  T GPR A R LRK+
Sbjct: 19  RLTSRDTDDEDLSGIVQLSEAVNLTVT-GPREASRTLRKK 57


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 256  IPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGINLEDIKEFAKAFKL 435
            +P+P AP  L+P SV +        +  + + P +  +S +     NLED     KA   
Sbjct: 1181 VPAPAAPQTLNPPSVSTVQQSKP--IESNTHTPEVKATSESPSASSNLEDRAARIKAEAQ 1238

Query: 436  RRL 444
            RR+
Sbjct: 1239 RRM 1241


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -3

Query: 455 SPRPSRRSLKAFANSLMSSKLIPSTTLLEDWLIVGWFGESANRSASS 315
           S  PS+ SL   + S  SS   PSTT L    +V  F  S  ++ SS
Sbjct: 572 SSNPSQASLTEESLSTRSSPTKPSTTSLRSQSLVNRFASSTLKAPSS 618


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 420 EGLQTATTWSGTYADPSRPSPVGHRRPAYSKVR-SADLRNWI*HQKVR 560
           E ++  T W G Y++ ++      R  +  KV     LRNW+  + ++
Sbjct: 469 ESVKAFTNWVGRYSEATKTQEDSSRLASMKKVNPHFTLRNWVLEEVIK 516


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 256 IPSPHAPVKLSPGSVKSPSHDDA-DLLADSPNQPT 357
           I SPHA    SP + K  SH+   D+ A  P +P+
Sbjct: 118 ISSPHADFSFSPPASKIQSHEPLNDMAAVHPLRPS 152


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 345 KPANDQPVFQQRSRWDQLRR-HQGIREGLQTATTWSGTY 458
           +P   QP  Q   +  Q R+ H GI++ + T  + +GTY
Sbjct: 185 QPQQPQPPQQPLQQQQQQRQLHSGIQQPVSTIVSQNGTY 223


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 589 DEGSRGKVRIRSKSSD---GLHWNGAEQKA 669
           DE   G+V++RS+ +D   G  W G  Q++
Sbjct: 17  DEQKNGRVKVRSRKTDDNEGYTWEGEYQRS 46


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 259 PSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGINLEDIK 411
           P+ H+P   S  SV + +     +L DSP    +   SSN      L+++K
Sbjct: 93  PTAHSPSSSSNDSVITATGVPDGILRDSPIVSALEPPSSNSSSSPQLQNLK 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,682
Number of Sequences: 5004
Number of extensions: 57513
Number of successful extensions: 217
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)