Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0571
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 33 0.18
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 30 1.7
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 29 3.0
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052... 29 3.0
04_04_1600 + 34704527-34704758,34705393-34706777 29 3.0
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 29 4.0
02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092... 29 4.0
04_04_0841 - 28574497-28574883,28575815-28576188,28576262-285764... 28 6.9
05_03_0293 - 11813846-11813965,11814073-11814408,11814516-118146... 28 9.2
04_04_0998 - 29996117-29996242,29996345-29996486,29996613-299968... 28 9.2
02_03_0396 - 18568908-18569032,18569157-18569262 28 9.2
02_03_0143 + 15685242-15686298,15688167-15688265,15688998-156890... 28 9.2
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = -3
Query: 464 VCVSPRPSRRSLKAFANSLMSSKLIPSTTLLEDWLIVGWFGESANRSASSCDGDFTEPGD 285
+ V + S+R L A + SS+L PS T ED+ V + G S+ + SS PG
Sbjct: 490 ISVQQQESKRPLPAES----SSQLQPSNTKKEDFGTVSFSGSSSVEAPSSSSASIINPGQ 545
Query: 284 SLTG 273
+ TG
Sbjct: 546 TATG 549
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 351 ANDQPVFQQRSRWDQLRRHQGIRE--GLQTATTWSGTYADPSRPSPV 485
+N+ QQR+R D+LR +G+ E G ++ + T D +PSPV
Sbjct: 428 SNESFAMQQRARPDELRTDRGLLERCGKLLSSIQAFTAGDDQQPSPV 474
>09_06_0020 -
20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Frame = +2
Query: 593 KEAEERYASGQNHLTDFIGME-------PSKKRKRRTSFTPQALELLNAHFERNTHP 742
+E E SG ++L G E P KK+KR TPQ ++ L A F+ HP
Sbjct: 91 REEENDSRSGSDNLDGASGDELDPDNSNPRKKKKRYHRHTPQQIQELEAVFKECPHP 147
>07_03_1731 -
29102403-29102720,29103529-29103735,29103937-29105210,
29105298-29105734,29106370-29106764,29106921-29107051,
29109034-29109052
Length = 926
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = +1
Query: 574 GARTLDEGSRGKV------RIRSKSSDGLHWNGAEQKAQTANIVHTSGPRTAQRALRKEH 735
G+ T G+ GK RI+ K+ DG NG+ A + + ++ +R L E
Sbjct: 74 GSSTASTGNGGKTPSDDDSRIKKKALDGGDSNGSSSSASNSPVTKVCRSKSRRRNLNNEE 133
Query: 736 PS 741
PS
Sbjct: 134 PS 135
>04_04_1600 + 34704527-34704758,34705393-34706777
Length = 538
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 655 LHSNEVRQMILTGCVPFLGFL 593
LH NEV+Q +L GC+ F+ L
Sbjct: 93 LHINEVQQEVLVGCLSFISLL 113
>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 277 VKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGIN 396
V P S SHD+ D+ DSP PT + V+ I+
Sbjct: 888 VSSPPSSPPHVSHDEMDVSGDSPALPTSADGDRTVMSDID 927
>02_05_0286 -
27506925-27507278,27508439-27508812,27509041-27509218,
27510878-27511105,27511215-27511316,27511415-27512131,
27512270-27512387,27512500-27512744,27512854-27513054,
27513920-27514324
Length = 973
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 614 ASGQNHLTDFIGMEPSKKRKRRTSFTPQALELLNAHFERNTHP 742
A+G++ + D K++KR TPQ ++ L A F+ HP
Sbjct: 250 AAGEDDVEDAEPSNSRKRKKRYHRHTPQQIQELEALFKECPHP 292
>04_04_0841 -
28574497-28574883,28575815-28576188,28576262-28576439,
28576816-28576896,28578134-28578361,28578460-28578579,
28578646-28579353,28579471-28579588,28579686-28579978,
28580101-28580169
Length = 851
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 656 PSKKRKRRTSFTPQALELLNAHFERNTHP 742
P K++KR TPQ ++ L A F+ HP
Sbjct: 101 PPKRKKRYHRHTPQQIQELEAMFKECPHP 129
>05_03_0293 -
11813846-11813965,11814073-11814408,11814516-11814617,
11814729-11814912,11815012-11815196,11815949-11816095,
11816310-11816426
Length = 396
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 671 CAFCSAPFQ*SPSDDFDRM-RTFPRLPSSNVRAPV*FSAHFLVLYPISQICRSHFAICWS 495
CAF F + D D++ ++FP++PS +RA + H L+ + + H I
Sbjct: 333 CAFYVMRFMEKYNGDADKLLQSFPKVPSDKLRAQI---LHHLIFNRFNSVQELHQDIETF 389
Query: 494 SVTDRA 477
V D A
Sbjct: 390 RVPDNA 395
>04_04_0998 -
29996117-29996242,29996345-29996486,29996613-29996812,
29997112-29997497,29997769-29998318,29998949-29999296
Length = 583
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -3
Query: 137 HVHFSL*HY*NTVRSSPSLCNASQALEKRIFCLACXAPYCS 15
HV SL T+R + EK IFC AC A YC+
Sbjct: 519 HVRLSLRPVGGTIRCPKCRERNFKDDEKYIFCWACRANYCT 559
>02_03_0396 - 18568908-18569032,18569157-18569262
Length = 76
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 101 VRSSPSLCNASQALEKRIFCL 39
V +SP L NASQ LE+++ CL
Sbjct: 27 VAASPKLSNASQNLEQKLDCL 47
>02_03_0143 +
15685242-15686298,15688167-15688265,15688998-15689072,
15689309-15689364,15689786-15689875
Length = 458
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 518 ICRFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDF 643
I R E L + + K E+W+ E+E +YA N T F
Sbjct: 209 ITRDENLAVADVEEWRAKEYTEKWLAESETKYAFPINFPTGF 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,226,255
Number of Sequences: 37544
Number of extensions: 417316
Number of successful extensions: 1476
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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