Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0571
(754 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47470| Best HMM Match : Pou (HMM E-Value=1.3e-22) 66 4e-11
SB_28281| Best HMM Match : Pou (HMM E-Value=0) 62 5e-10
SB_31379| Best HMM Match : Pou (HMM E-Value=0) 56 4e-08
SB_12335| Best HMM Match : Pou (HMM E-Value=0) 54 2e-07
SB_53272| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_34509| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_54937| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_26105| Best HMM Match : Homeobox (HMM E-Value=1.1e-30) 31 1.3
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_21212| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_48629| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_27990| Best HMM Match : DUF229 (HMM E-Value=6.5e-07) 30 1.8
SB_20497| Best HMM Match : Homeobox (HMM E-Value=1.4013e-45) 30 2.3
SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42) 29 4.1
SB_48630| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_21036| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27) 29 5.4
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_21241| Best HMM Match : ErmC (HMM E-Value=1.1) 28 7.1
SB_57478| Best HMM Match : TPR_1 (HMM E-Value=0) 28 7.1
SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_26785| Best HMM Match : Mod_r (HMM E-Value=2) 28 7.1
SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14) 28 9.4
SB_16450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_49708| Best HMM Match : Homeobox (HMM E-Value=8.1e-30) 28 9.4
SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24) 28 9.4
>SB_47470| Best HMM Match : Pou (HMM E-Value=1.3e-22)
Length = 441
Score = 65.7 bits (153), Expect = 4e-11
Identities = 35/82 (42%), Positives = 52/82 (63%)
Frame = +2
Query: 509 QSAICRFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFIGMEPSKKRKRRTSF 688
QS I RFE ++ K+A+K+KPV++ W+++ E + G + KKRKRRTSF
Sbjct: 191 QSFISRFESKNLGLKAAEKMKPVMQSWIEQKELECSKG---------LRVCKKRKRRTSF 241
Query: 689 TPQALELLNAHFERNTHPSGTE 754
+ +AL LL +HFE+N PS +E
Sbjct: 242 SNEALRLLISHFEQNPKPSSSE 263
>SB_28281| Best HMM Match : Pou (HMM E-Value=0)
Length = 250
Score = 62.1 bits (144), Expect = 5e-10
Identities = 37/86 (43%), Positives = 50/86 (58%)
Frame = +2
Query: 497 TSI*QSAICRFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFIGMEPSKKRKR 676
T Q+ ICRFE L ++ K+A K+KP+L RW++EAE SG + G E ++RKR
Sbjct: 127 TDFSQTTICRFENLQLSFKNACKLKPILARWLEEAER---SG-GACGEKFGAE--RRRKR 180
Query: 677 RTSFTPQALELLNAHFERNTHPSGTE 754
RT+ A E L HF + T PS E
Sbjct: 181 RTTIGLAAKEALENHFMKQTKPSSPE 206
Score = 44.4 bits (100), Expect = 1e-04
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +1
Query: 382 VDGINLEDIKEFAKAFKLRRLGLGLTQTQVGQALSV---TEDQHIAKCDLQI*EIGYNTK 552
VD L +++EFA FKLRR+ LG TQT VG AL+ T+ C + ++ +
Sbjct: 88 VDPSKLRELEEFATQFKLRRIKLGFTQTNVGAALAAVHGTDFSQTTICRFENLQLSFK-N 146
Query: 553 KCAENQTGARTLDEGSR 603
C AR L+E R
Sbjct: 147 ACKLKPILARWLEEAER 163
>SB_31379| Best HMM Match : Pou (HMM E-Value=0)
Length = 310
Score = 55.6 bits (128), Expect = 4e-08
Identities = 30/82 (36%), Positives = 45/82 (54%)
Frame = +2
Query: 500 SI*QSAICRFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFIGMEPSKKRKRR 679
S+ QS ICRFE L ++ + +KPVL W++EAE+ Y + Q + + S K+++R
Sbjct: 195 SLSQSTICRFESLTLSHNNMMALKPVLTAWLEEAEKAYKTKQ---CNSAFLPNSDKKRKR 251
Query: 680 TSFTPQALELLNAHFERNTHPS 745
TS L A+F N PS
Sbjct: 252 TSIGAAEKRSLEAYFAMNPRPS 273
Score = 36.3 bits (80), Expect = 0.027
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 385 DGINLEDIKEFAKAFKLRRLGLGLTQTQVGQALS 486
D +N +++ FA+ FK RR+ LG+TQ VG AL+
Sbjct: 153 DDMNPRELEWFAERFKQRRIKLGVTQADVGSALA 186
>SB_12335| Best HMM Match : Pou (HMM E-Value=0)
Length = 401
Score = 53.6 bits (123), Expect = 2e-07
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Frame = +2
Query: 509 QSAICRFEKLDITPKSAQKIKPVLERWMKEAEERYASG-----QNHLTDFIGME---PSK 664
Q+ ICRFE L ++ K+ K+KP+L++W++E + +SG Q + ++F P K
Sbjct: 260 QTTICRFEALQLSLKNMCKLKPLLQKWLQETDAS-SSGHEGEKQQNPSNFAFATHNGPYK 318
Query: 665 KRKRRTSFTPQALELLNAHFERNTHPSGTE 754
KRKRRT +L HFE+ PS ++
Sbjct: 319 KRKRRTIIEKNVKGVLENHFEKMPRPSTSD 348
>SB_53272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/82 (34%), Positives = 46/82 (56%)
Frame = +2
Query: 509 QSAICRFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFIGMEPSKKRKRRTSF 688
Q+ ICRFE L ++ K+ K+KP+L++W++EA+ +G D + +KRK+RTS
Sbjct: 239 QTTICRFEALQLSFKNMCKLKPLLQKWLEEADNN--NGATGGVDKLA-TTGRKRKKRTSI 295
Query: 689 TPQALELLNAHFERNTHPSGTE 754
L HF ++ P+ E
Sbjct: 296 EVAVKGALENHFCKSPKPTAQE 317
Score = 37.1 bits (82), Expect = 0.015
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +1
Query: 400 EDIKEFAKAFKLRRLGLGLTQTQVGQAL 483
+D+++FAK FK RR+ LG TQ VG AL
Sbjct: 202 DDLEQFAKQFKQRRIKLGFTQADVGLAL 229
>SB_34509| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 37.1 bits (82), Expect = 0.015
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 611 YASGQNHLTDFIGMEPSKKRKRRTSFTPQALELLNAHFERNTHP 742
Y G D + +P +KR+ RT FT + LELL F++ +P
Sbjct: 56 YLVGFPRYADVLRSQPKRKRRHRTIFTEEQLELLETTFQKTHYP 99
>SB_54937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 662 KKRKRRTSFTPQALELLNAHFERNTHP 742
K R+ RT+FTP LE+L FE++ +P
Sbjct: 108 KLRRNRTTFTPDQLEMLEKEFEKSHYP 134
>SB_26105| Best HMM Match : Homeobox (HMM E-Value=1.1e-30)
Length = 315
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 662 KKRKRRTSFTPQALELLNAHFERNTHPSGTE 754
K ++ RT FTP+ LE L FER + G E
Sbjct: 247 KPKRIRTIFTPEQLERLEKEFERQQYMVGAE 277
>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +3
Query: 387 WDQLRRHQGIREGLQTATTWSGTYADPS-RPSPVGHRRPAYSKVRSADLR-NWI*HQKVR 560
W +H +R G TTW T R +SKVR R + + H KVR
Sbjct: 1044 WCDTVQHSKVRHG----TTWCDTVQHSKVRHGTTRCDTVQHSKVRHGTTRCDTLQHSKVR 1099
Query: 561 RKSNRCSNVG*RKPRKGT 614
+ RC V K R GT
Sbjct: 1100 HGTTRCDTVQHSKVRHGT 1117
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 504 YSKVRSADLR-NWI*HQKVRRKSNRCSNVG*RKPRKGT 614
+SKVR R + + H KVR + RC V K R GT
Sbjct: 1095 HSKVRHGTTRCDTVQHSKVRHGTTRCDTVQHSKVRHGT 1132
>SB_21212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 668 RKRRTSFTPQALELLNAHFERNTHP 742
R++RT+FT L+L+ A+F N +P
Sbjct: 78 RRKRTTFTHDQLQLMEAYFHNNRYP 102
>SB_48629| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 605 ERYASGQNHLTDFIGMEPSKKRKRRTSFTPQALELLNAHFERNTH 739
E Y L D + KKRK RT+FT L L F RN +
Sbjct: 126 ENYEEDIEELDD-CNKQKGKKRKERTAFTTHQLRELENEFTRNNY 169
>SB_27990| Best HMM Match : DUF229 (HMM E-Value=6.5e-07)
Length = 887
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 570 NRCSNVG*RKPRKGTHPVKII*RTSLEWSRAKSANGEHRSHLRP*NCSTRTSK 728
+RC N+G RK RK K + + + K A+ +++H +P C+ R K
Sbjct: 165 SRCDNIGLRKYRKHKEKPKCVAHMA-QAKYCKLAHEAYKTHKKPLTCADRIDK 216
>SB_20497| Best HMM Match : Homeobox (HMM E-Value=1.4013e-45)
Length = 527
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 662 KKRKRRTSFTPQALELLNAHFERNTH 739
KKRK RT+FT ++ L F+RN +
Sbjct: 91 KKRKERTAFTKHQIQELENEFQRNNY 116
>SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 659 SKKRKRRTSFTPQALELLNAHFERNTHPSGTE 754
S+ R+ RT+FTP L L F++N + GTE
Sbjct: 130 SRVRRVRTAFTPFQLLCLETSFDKNHYVVGTE 161
>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 999
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 268 HAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGIN 396
H P K SP S K S DD D L+ + +++SN G N
Sbjct: 107 HEPPKPSPRSSKQHSLDDGDDLSPRAKPRPLPRATSNTSSGRN 149
>SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42)
Length = 328
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 662 KKRKRRTSFTPQALELLNAHFERNTHPSGTE 754
K ++ RT+FT L++L A+F +++P G +
Sbjct: 253 KAKRVRTTFTEDQLQILQANFNIDSNPDGQD 283
>SB_48630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 587 WMKEAEERYASGQNHLTDFIGMEPSKKRKRRTSFTPQALELLNAHFERNTH 739
+ EA Q+ D G + ++KRK RT+F+ L+ L F RN +
Sbjct: 116 FFNEAYPSDEGSQSPSDDGDGGKTTRKRKERTAFSKHQLQELENEFIRNNY 166
>SB_21036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 662 KKRKRRTSFTPQALELLNAHFERNTHP 742
K+R+ RT+FT Q L+ L FE+ +P
Sbjct: 67 KQRRNRTTFTKQQLQELEKVFEKKHYP 93
>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
Length = 418
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 647 GMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTE 754
G EP KKRKRR FT L F + + S E
Sbjct: 86 GNEPPKKRKRRVLFTKAQTYELERRFRQQRYLSAPE 121
>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 557 AQKIKPVLERWMKEAEERYASGQNHLTDFIGMEPSK-KRKRRTSFTPQALELLNAHFERN 733
AQ P ++ ++ + S D + SK R++RT+FT + +E L FE+
Sbjct: 291 AQHTSPSKRKYSVDSADSTGSHSGDEGDDPNSQRSKMSRRQRTNFTDEQIEKLEKVFEKT 350
Query: 734 THP 742
+P
Sbjct: 351 HYP 353
>SB_21241| Best HMM Match : ErmC (HMM E-Value=1.1)
Length = 562
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 342 TKPANDQPVFQQRSRWDQLRRHQGIREGLQTATTWSGTYAD 464
T P+ND ++R + LR+H+ ++GLQ +SG AD
Sbjct: 186 TDPSNDGMSLRERVQ-KTLRKHEKEKQGLQEVHFFSGREAD 225
>SB_57478| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 360
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 582 SSTGLIFCALFGVISNFSNLQIALCYMLVFGDRQGLA 472
++ GL+FC+L N + ALC FG+ G A
Sbjct: 225 NNIGLVFCSLGDNSQAMMNFKKALCIFRKFGEEHGQA 261
>SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 507 YMLVFGDRQGLAYLGLRKSQTKSSQFEGLREFLDVF*VD 391
Y++++GD + L+ SQ+ ++FE R DVF VD
Sbjct: 1361 YIILYGDNDDTGKIPLKTSQSNKNKFE--RNQTDVFPVD 1397
>SB_26785| Best HMM Match : Mod_r (HMM E-Value=2)
Length = 159
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 638 DFIGMEPSKKRKRRTSFT 691
DFIG P+KKRK +T T
Sbjct: 116 DFIGQRPTKKRKAQTELT 133
>SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14)
Length = 1085
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -1
Query: 736 GVPFEVRVEQF*GLRCERCSPFALFARLHSNEVRQMILTGCVPFLGFLHPTFEHRFDFLR 557
G+P V +F ER F F + +V + + T C + FL ++ FL+
Sbjct: 82 GLPANKTVVRFFKTAYERVLKFC-FLKTAYEKVMRFLKTACERVMRFLKTAYKREMRFLK 140
Query: 556 T-FWCYIQFLKSA 521
T + ++FLK+A
Sbjct: 141 TAYERVMRFLKTA 153
>SB_16450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 653 EPSKKRKRRTSFTPQALELLNAHFERNTHP 742
+P K R+ RT+FT L L FE+ +P
Sbjct: 88 KPRKVRRSRTTFTTYQLHQLERAFEKTQYP 117
>SB_49708| Best HMM Match : Homeobox (HMM E-Value=8.1e-30)
Length = 197
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 647 GMEPSKKRKR-RTSFTP-QALELLNAHFERNTHPSGTE 754
G ++ KR RT+FTP Q L L NA FE+N + GTE
Sbjct: 84 GFVACRRPKRIRTAFTPTQLLHLENA-FEKNHYIVGTE 120
>SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)
Length = 963
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 653 EPSKKRKRRTSFTPQALELLNAHFERNTHPSGTE 754
EP KKRKRR FT +L F + + S E
Sbjct: 87 EPPKKRKRRILFTKAQTFILERRFTQQRYLSAPE 120
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,704,871
Number of Sequences: 59808
Number of extensions: 467334
Number of successful extensions: 1642
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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