Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0571
(754 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75711-7|CAB00031.2| 380|Caenorhabditis elegans Hypothetical pr... 59 3e-09
AF286377-1|AAG10298.1| 380|Caenorhabditis elegans POU family II... 59 3e-09
M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein ( C.ele... 54 8e-08
M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein ( C.ele... 54 8e-08
L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated p... 54 8e-08
L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated p... 54 8e-08
U39740-4|AAO91692.1| 417|Caenorhabditis elegans C.elegans homeo... 35 0.054
U39740-3|AAA80426.2| 542|Caenorhabditis elegans C.elegans homeo... 35 0.054
U39740-2|AAM69077.1| 540|Caenorhabditis elegans C.elegans homeo... 35 0.054
U16367-1|AAA52203.1| 542|Caenorhabditis elegans CEH-18 protein. 35 0.054
Z78546-6|CAB54307.1| 642|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z78545-5|CAB01764.2| 642|Caenorhabditis elegans Hypothetical pr... 31 0.66
U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative transc... 30 2.0
U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain fami... 30 2.0
AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical ... 29 3.5
Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z48582-7|CAA88468.2| 308|Caenorhabditis elegans Hypothetical pr... 28 6.2
U80028-8|AAN73866.1| 378|Caenorhabditis elegans Serpentine rece... 28 6.2
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p... 28 8.2
AY390544-1|AAQ94956.1| 160|Caenorhabditis elegans SMA-9 class I... 28 8.2
AY390543-1|AAQ94955.1| 251|Caenorhabditis elegans SMA-9 class I... 28 8.2
AY390542-1|AAQ94954.1| 468|Caenorhabditis elegans SMA-9 class I... 28 8.2
>Z75711-7|CAB00031.2| 380|Caenorhabditis elegans Hypothetical
protein K02B12.1 protein.
Length = 380
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = +2
Query: 509 QSAICRFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFIGMEPSKKRKRRTSF 688
Q+ ICRFE L ++ K+ K+KP+L +W++EA+ S + G + +KRK+RTS
Sbjct: 230 QTTICRFEALQLSFKNMCKLKPLLFKWLEEADSTTGSPNSTFEKMTG-QAGRKRKKRTSI 288
Query: 689 TPQALELLNAHFERNTHPSGTE 754
L HF+ N P+ E
Sbjct: 289 EVNVKSRLEFHFQSNQKPNAQE 310
Score = 35.9 bits (79), Expect = 0.031
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +1
Query: 334 ADSPNQPTISQSSSNVVDGINLEDIKEFAKAFKLRRLGLGLTQTQVGQAL 483
A P+QP S + + +D++ FAK FK RR+ LG TQ VG AL
Sbjct: 173 AGGPHQPLSDISDDS--EQTCPDDLEGFAKQFKQRRIKLGYTQADVGVAL 220
>AF286377-1|AAG10298.1| 380|Caenorhabditis elegans POU family III
homeodomain proteinCEH-6 protein.
Length = 380
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = +2
Query: 509 QSAICRFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFIGMEPSKKRKRRTSF 688
Q+ ICRFE L ++ K+ K+KP+L +W++EA+ S + G + +KRK+RTS
Sbjct: 230 QTTICRFEALQLSFKNMCKLKPLLFKWLEEADSTTGSPNSTFEKMTG-QAGRKRKKRTSI 288
Query: 689 TPQALELLNAHFERNTHPSGTE 754
L HF+ N P+ E
Sbjct: 289 EVNVKSRLEFHFQSNQKPNAQE 310
Score = 35.9 bits (79), Expect = 0.031
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +1
Query: 334 ADSPNQPTISQSSSNVVDGINLEDIKEFAKAFKLRRLGLGLTQTQVGQAL 483
A P+QP S + + +D++ FAK FK RR+ LG TQ VG AL
Sbjct: 173 AGGPHQPLSDISDDS--EQTCPDDLEGFAKQFKQRRIKLGYTQADVGVAL 220
>M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 429
Score = 54.4 bits (125), Expect = 8e-08
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +2
Query: 500 SI*QSAICRFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFIGMEPS--KKRK 673
S+ QS ICRFE L ++ + +KP+L W+++AEE ++ + D G+ P+ KKRK
Sbjct: 270 SLSQSTICRFESLTLSHNNMVALKPILHSWLEKAEEAMKQ-KDTIGDINGILPNTDKKRK 328
Query: 674 RRTSFTPQALELLNAHFERNTHPSG 748
R + P+ E L F++ PSG
Sbjct: 329 RTSIAAPEKRE-LEQFFKQQPRPSG 352
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1
Query: 406 IKEFAKAFKLRRLGLGLTQTQVGQALS 486
++ FA+ FK RR+ LG+TQ VG+AL+
Sbjct: 235 LETFAEHFKQRRIKLGVTQADVGKALA 261
>M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 467
Score = 54.4 bits (125), Expect = 8e-08
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +2
Query: 500 SI*QSAICRFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFIGMEPS--KKRK 673
S+ QS ICRFE L ++ + +KP+L W+++AEE ++ + D G+ P+ KKRK
Sbjct: 308 SLSQSTICRFESLTLSHNNMVALKPILHSWLEKAEEAMKQ-KDTIGDINGILPNTDKKRK 366
Query: 674 RRTSFTPQALELLNAHFERNTHPSG 748
R + P+ E L F++ PSG
Sbjct: 367 RTSIAAPEKRE-LEQFFKQQPRPSG 390
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1
Query: 406 IKEFAKAFKLRRLGLGLTQTQVGQALS 486
++ FA+ FK RR+ LG+TQ VG+AL+
Sbjct: 273 LETFAEHFKQRRIKLGVTQADVGKALA 299
>L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated
protein 86, isoform b protein.
Length = 467
Score = 54.4 bits (125), Expect = 8e-08
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +2
Query: 500 SI*QSAICRFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFIGMEPS--KKRK 673
S+ QS ICRFE L ++ + +KP+L W+++AEE ++ + D G+ P+ KKRK
Sbjct: 308 SLSQSTICRFESLTLSHNNMVALKPILHSWLEKAEEAMKQ-KDTIGDINGILPNTDKKRK 366
Query: 674 RRTSFTPQALELLNAHFERNTHPSG 748
R + P+ E L F++ PSG
Sbjct: 367 RTSIAAPEKRE-LEQFFKQQPRPSG 390
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1
Query: 406 IKEFAKAFKLRRLGLGLTQTQVGQALS 486
++ FA+ FK RR+ LG+TQ VG+AL+
Sbjct: 273 LETFAEHFKQRRIKLGVTQADVGKALA 299
>L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated
protein 86, isoform a protein.
Length = 429
Score = 54.4 bits (125), Expect = 8e-08
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +2
Query: 500 SI*QSAICRFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFIGMEPS--KKRK 673
S+ QS ICRFE L ++ + +KP+L W+++AEE ++ + D G+ P+ KKRK
Sbjct: 270 SLSQSTICRFESLTLSHNNMVALKPILHSWLEKAEEAMKQ-KDTIGDINGILPNTDKKRK 328
Query: 674 RRTSFTPQALELLNAHFERNTHPSG 748
R + P+ E L F++ PSG
Sbjct: 329 RTSIAAPEKRE-LEQFFKQQPRPSG 352
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1
Query: 406 IKEFAKAFKLRRLGLGLTQTQVGQALS 486
++ FA+ FK RR+ LG+TQ VG+AL+
Sbjct: 235 LETFAEHFKQRRIKLGVTQADVGKALA 261
>U39740-4|AAO91692.1| 417|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform c protein.
Length = 417
Score = 35.1 bits (77), Expect = 0.054
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +2
Query: 497 TSI*QSAICRFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFI 646
T Q+ I RFE L+++ K+ K++P+L+ W+ + E G +TD I
Sbjct: 342 TDFSQTTISRFEALNLSFKNMCKLRPLLKEWLADVEMAIEGGAT-VTDLI 390
>U39740-3|AAA80426.2| 542|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform a protein.
Length = 542
Score = 35.1 bits (77), Expect = 0.054
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +2
Query: 497 TSI*QSAICRFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFI 646
T Q+ I RFE L+++ K+ K++P+L+ W+ + E G +TD I
Sbjct: 329 TDFSQTTISRFEALNLSFKNMCKLRPLLKEWLADVEMAIEGGAT-VTDLI 377
>U39740-2|AAM69077.1| 540|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform b protein.
Length = 540
Score = 35.1 bits (77), Expect = 0.054
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +2
Query: 497 TSI*QSAICRFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFI 646
T Q+ I RFE L+++ K+ K++P+L+ W+ + E G +TD I
Sbjct: 327 TDFSQTTISRFEALNLSFKNMCKLRPLLKEWLADVEMAIEGGAT-VTDLI 375
>U16367-1|AAA52203.1| 542|Caenorhabditis elegans CEH-18 protein.
Length = 542
Score = 35.1 bits (77), Expect = 0.054
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +2
Query: 497 TSI*QSAICRFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFI 646
T Q+ I RFE L+++ K+ K++P+L+ W+ + E G +TD I
Sbjct: 329 TDFSQTTISRFEALNLSFKNMCKLRPLLKEWLADVEMAIEGGAT-VTDLI 377
>Z78546-6|CAB54307.1| 642|Caenorhabditis elegans Hypothetical
protein M03B6.3 protein.
Length = 642
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 346 NQPTISQSSSNVVDGINLEDIKEFAKAFKLRRLG 447
+QP +++ VDG+ ++D +A+ F+L RLG
Sbjct: 119 SQPPTTKAKEMYVDGVKVKDWDRYARKFQLERLG 152
>Z78545-5|CAB01764.2| 642|Caenorhabditis elegans Hypothetical
protein M03B6.3 protein.
Length = 642
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 346 NQPTISQSSSNVVDGINLEDIKEFAKAFKLRRLG 447
+QP +++ VDG+ ++D +A+ F+L RLG
Sbjct: 119 SQPPTTKAKEMYVDGVKVKDWDRYARKFQLERLG 152
>U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative
transcription factor LIM-4 protein.
Length = 355
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +2
Query: 644 IGMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTE 754
+ + +K ++ RT+F L +L +F R+++P G +
Sbjct: 232 VSSQKAKTKRVRTTFAEDQLSVLQTYFNRDSNPDGAD 268
>U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain family
protein 4 protein.
Length = 355
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +2
Query: 644 IGMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTE 754
+ + +K ++ RT+F L +L +F R+++P G +
Sbjct: 232 VSSQKAKTKRVRTTFAEDQLSVLQTYFNRDSNPDGAD 268
>AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical
protein Y39G10AR.11 protein.
Length = 788
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 309 IARRRRSVGRLTKPANDQPVFQQ--RSRW-DQLRRHQGIREGLQ 431
+A RRS+ RLT+ A +Q Q+ R RW DQ+ + + + E L+
Sbjct: 674 LAEARRSIARLTEDAKEQSEAQEFDRLRWNDQVDQLKEVNEELK 717
>Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 659 SKKRKRRTSFTPQALELLNAHFERNTHP 742
+ R+ RTSFT + L++L F +T+P
Sbjct: 185 ASSRRNRTSFTAEQLDVLENAFRADTYP 212
>Z48582-7|CAA88468.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 659 SKKRKRRTSFTPQALELLNAHFERNTHP 742
+ R+ RTSFT + L++L F +T+P
Sbjct: 185 ASSRRNRTSFTAEQLDVLENAFRADTYP 212
>U80028-8|AAN73866.1| 378|Caenorhabditis elegans Serpentine
receptor, class w protein118 protein.
Length = 378
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = -2
Query: 621 PDAYLSSASFIQRSSTGLIFCA--LFGVISNFSNLQIALCYML--VFGDRQGLAYLG 463
P+ S S I RS TGL+FC F ++ L I +M V G + +AY G
Sbjct: 254 PNIISVSKSNISRSKTGLVFCVTITFFIVEFPYGLSIGFSWMFHNVLGLHRIVAYFG 310
>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
protein T05A10.1g protein.
Length = 1888
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +1
Query: 253 AIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGINLEDIKEFAKA 426
+IP+P PV L+P +++ ++ + A N P+ +Q VV +L+ + A++
Sbjct: 1772 SIPAPQ-PVALTPEMIRALANAQTPVTASMTNTPSTAQFPVGVVSTPSLQQLHYVAQS 1828
>AY390544-1|AAQ94956.1| 160|Caenorhabditis elegans SMA-9 class IIa
protein.
Length = 160
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +1
Query: 253 AIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGINLEDIKEFAKA 426
+IP+P PV L+P +++ ++ + A N P+ +Q VV +L+ + A++
Sbjct: 44 SIPAPQ-PVALTPEMIRALANAQTPVTASMTNTPSTAQFPVGVVSTPSLQQLHYVAQS 100
>AY390543-1|AAQ94955.1| 251|Caenorhabditis elegans SMA-9 class IIa
protein.
Length = 251
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +1
Query: 253 AIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGINLEDIKEFAKA 426
+IP+P PV L+P +++ ++ + A N P+ +Q VV +L+ + A++
Sbjct: 135 SIPAPQ-PVALTPEMIRALANAQTPVTASMTNTPSTAQFPVGVVSTPSLQQLHYVAQS 191
>AY390542-1|AAQ94954.1| 468|Caenorhabditis elegans SMA-9 class IIa
protein.
Length = 468
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +1
Query: 253 AIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGINLEDIKEFAKA 426
+IP+P PV L+P +++ ++ + A N P+ +Q VV +L+ + A++
Sbjct: 352 SIPAPQ-PVALTPEMIRALANAQTPVTASMTNTPSTAQFPVGVVSTPSLQQLHYVAQS 408
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,394,776
Number of Sequences: 27780
Number of extensions: 329315
Number of successful extensions: 1306
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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