Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0571
(754 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g48120.1 68416.m05248 expressed protein 33 0.27
At1g17980.2 68414.m02224 nucleotidyltransferase family protein c... 30 1.4
At1g17980.1 68414.m02225 nucleotidyltransferase family protein c... 30 1.4
At4g10840.2 68417.m01764 kinesin light chain-related low similar... 30 1.9
At4g10840.1 68417.m01765 kinesin light chain-related low similar... 30 1.9
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR... 29 4.4
At5g58140.4 68418.m07274 protein kinase family protein / non pho... 28 7.7
At5g58140.3 68418.m07277 protein kinase family protein / non pho... 28 7.7
At5g58140.2 68418.m07276 protein kinase family protein / non pho... 28 7.7
At5g58140.1 68418.m07275 protein kinase family protein / non pho... 28 7.7
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family... 28 7.7
At3g18215.1 68416.m02317 expressed protein contains Pfam profile... 28 7.7
At1g61215.1 68414.m06898 DNA-binding bromodomain-containing prot... 28 7.7
>At3g48120.1 68416.m05248 expressed protein
Length = 328
Score = 32.7 bits (71), Expect = 0.27
Identities = 27/97 (27%), Positives = 41/97 (42%)
Frame = +3
Query: 336 RLTKPANDQPVFQQRSRWDQLRRHQGIREGLQTATTWSGTYADPSRPSPVGHRRPAYSKV 515
+L K D V ++ R RR RE + + R S R S+
Sbjct: 76 KLKKKPEDPRVPERSYRESSERRRYRSRERDERDKSHRRRSRSSERRSSYVDRERRRSRS 135
Query: 516 RSADLRNWI*HQKVRRKSNRCSNVG*RKPRKGTHPVK 626
RSA+ RN ++ RR+SNR ++ R+ R+ VK
Sbjct: 136 RSAERRNRYGDRESRRRSNRSRSLSPRRERRSREDVK 172
>At1g17980.2 68414.m02224 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 586
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = +3
Query: 300 EVAIAR-RRRSVGRLTKPANDQPVFQQRSRWDQLRRHQGIREGLQTATTWSGTYADPSRP 476
E+++ +RRS+ P +P + WD RR + +A + T + S
Sbjct: 339 EISVGHIKRRSLPNFVFPGGVRPSHTSKGTWDSNRRSEHRNSSTSSAPAATTTTTEMSSE 398
Query: 477 SPVGHRRPAYSKVR 518
S G P K R
Sbjct: 399 SKAGSNSPVDGKKR 412
>At1g17980.1 68414.m02225 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 713
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = +3
Query: 300 EVAIAR-RRRSVGRLTKPANDQPVFQQRSRWDQLRRHQGIREGLQTATTWSGTYADPSRP 476
E+++ +RRS+ P +P + WD RR + +A + T + S
Sbjct: 466 EISVGHIKRRSLPNFVFPGGVRPSHTSKGTWDSNRRSEHRNSSTSSAPAATTTTTEMSSE 525
Query: 477 SPVGHRRPAYSKVR 518
S G P K R
Sbjct: 526 SKAGSNSPVDGKKR 539
>At4g10840.2 68417.m01764 kinesin light chain-related low similarity
to kinesin light chain [Plectonema boryanum] GI:2645229;
contains Pfam profile PF00515 TPR Domain
Length = 531
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 265 PHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVD 387
P P+K +P S S S + + PT+S S++ V+D
Sbjct: 33 PRTPMKKTPSSTPSRSKPSPNRSTGKKDSPTVSSSTAAVID 73
>At4g10840.1 68417.m01765 kinesin light chain-related low similarity
to kinesin light chain [Plectonema boryanum] GI:2645229;
contains Pfam profile PF00515 TPR Domain
Length = 609
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 265 PHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVD 387
P P+K +P S S S + + PT+S S++ V+D
Sbjct: 33 PRTPMKKTPSSTPSRSKPSPNRSTGKKDSPTVSSSTAAVID 73
>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1095
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 349 QPTISQSSSNVVDGINLEDIKEFAKAFKLRRLGLGLTQTQVGQALSVTEDQHI 507
QP + + N+ NLE + +A KL RL LG ++ V S+ QH+
Sbjct: 628 QPLRNLRTMNLNSSRNLEILPNLMEATKLNRLDLGWCESLVELPSSIKNLQHL 680
>At5g58140.4 68418.m07274 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 689
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 366 VFQQRSRWDQLRRHQGIREGLQTATT 443
V QR WD R + IR+G+ ATT
Sbjct: 358 VIGQRDSWDLSDRERDIRQGIDLATT 383
>At5g58140.3 68418.m07277 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 366 VFQQRSRWDQLRRHQGIREGLQTATT 443
V QR WD R + IR+G+ ATT
Sbjct: 358 VIGQRDSWDLSDRERDIRQGIDLATT 383
>At5g58140.2 68418.m07276 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 366 VFQQRSRWDQLRRHQGIREGLQTATT 443
V QR WD R + IR+G+ ATT
Sbjct: 358 VIGQRDSWDLSDRERDIRQGIDLATT 383
>At5g58140.1 68418.m07275 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 366 VFQQRSRWDQLRRHQGIREGLQTATT 443
V QR WD R + IR+G+ ATT
Sbjct: 358 VIGQRDSWDLSDRERDIRQGIDLATT 383
>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
protein identical to hydroxyproline-rich glycoprotein
[Arabidopsis thaliana] gi|9293881|dbj|BAB01784
Length = 532
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 533 KLDITPKSAQKIKPVLERWMKEAEER 610
+L +TP +K K + E W K EER
Sbjct: 220 RLLVTPSVKEKAKEIAETWKKSLEER 245
>At3g18215.1 68416.m02317 expressed protein contains Pfam profile
PF04654: Protein of unknown function, DUF599
Length = 244
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/40 (25%), Positives = 26/40 (65%)
Frame = -2
Query: 612 YLSSASFIQRSSTGLIFCALFGVISNFSNLQIALCYMLVF 493
++S++S + ++T LI+ + +++F N I +C+++ F
Sbjct: 92 FVSNSSSSKSTATNLIYGSKSPRLASFKNFAILICFLMAF 131
>At1g61215.1 68414.m06898 DNA-binding bromodomain-containing protein
contains Pfam profile PF00439: Bromodomain
Length = 475
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 498 PAYSKVRSADLRNWI*HQKVRRKSNRCSNVG*RKPRKGTHPVKII 632
P S + + + + HQK S R S +KPR G HP+K +
Sbjct: 371 PHRSSITAGSTKVVVLHQKSTSPSVRTSLAA-KKPRTGAHPLKTV 414
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,684,628
Number of Sequences: 28952
Number of extensions: 315520
Number of successful extensions: 1127
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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