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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0569
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    27   3.2  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   4.2  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    26   5.6  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    26   5.6  
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.4  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.4  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   7.4  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    25   9.8  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   9.8  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   9.8  
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||...    25   9.8  

>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -3

Query: 447 KHNHNTSFARKR*NMPSHSDQLIKHTSQNFSSSNNCNTNIY---RLFNTHIIFNFIF 286
           K N N S       +P  +  LI +TSQN+S  NN ++ +Y   R F+T    +F F
Sbjct: 154 KENPNISVLE---TLPDSTSYLI-NTSQNYSLRNNVSSFVYEDSRAFSTEEPLDFEF 206


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 338 IQIYTDYLTHILYLILFSSTYVFTFTNHYPINV 240
           + +Y  ++  I+YL+L +   +F    H+P+ V
Sbjct: 375 VSLYCSFVYAIIYLLLEAYPVIFQEGRHFPLGV 407


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 356 AVPITA-IQIYTDYLTHILYLILFSSTYVFTFTNHY 252
           A PI   I ++  Y+  ILYL+L +  Y F  T ++
Sbjct: 286 ATPIVFFIAMFASYVYGILYLVLTTIPYTFGMTKNW 321


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 290 IKLNIICVLNNLYIFVLQLLE 352
           I LNI+CV+  ++IF  QL++
Sbjct: 224 IHLNILCVIAQMFIFREQLID 244


>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 12  LNLTN*GSIPLKTSIVNH*NKIMECGFEKGTIKLDSIRNVFYSGQIVTGSVNFTLDRP 185
           LNL    ++P++T+  N+  KI++C    G I L S  N     QI  G       +P
Sbjct: 107 LNLYGGYNVPMETNPFNNWAKIVDC----GDIPLTSYDNAVAIKQIENGHFELLTRKP 160


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 479 VIIKYTAISVRELKTIFLSMFYINFSLTEAYWF 577
           ++ K T+I++   KT+ +  F++      AYWF
Sbjct: 77  IVNKTTSIALALFKTLAVISFFLLIGCLFAYWF 109


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 396 HSDQLIKHTSQNFSSSNNCN 337
           H + +  HT+Q+F S++ CN
Sbjct: 485 HPEVIASHTAQSFKSTHYCN 504


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = +3

Query: 96  KGTIKLDSIRNVFYSGQIVTGSVNFT 173
           K T+++ + R++F+SGQI+  ++ +T
Sbjct: 269 KTTLEVHTDRSLFFSGQIIDFTICYT 294


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 144 DQNKTHFLLSPTLWCL 97
           D N+  F L+P LWCL
Sbjct: 34  DLNRFGFSLNPVLWCL 49


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -3

Query: 567 ASVSEKFI*NILRNIVFNSRTDIAVYL-IMTSLFTSALFINKHNHNTSFARKR*NMPSHS 391
           A++S  F  N+  N  +N ++ IAV   I   L T    + +  H     RK        
Sbjct: 401 ATISNDF--NLKGNGRYNEKSQIAVPSEIRVQLSTLDAILLQFEH----LRKELTQARKE 454

Query: 390 DQLIKHTSQNFSSSNN 343
            Q+++HTSQN    +N
Sbjct: 455 IQILRHTSQNGDQESN 470


>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 265

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 635 NFLYCSWMQIAYSTL*LIN*TSKPQSVKNLYKTYSEILFLIRGQI 501
           N  YCS     Y++L  ++ TS   ++KN   TYS    L  G +
Sbjct: 188 NTKYCSLYDRGYTSLGGVSDTSPNPALKNPDGTYSPAYLLSDGSL 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,609
Number of Sequences: 5004
Number of extensions: 55848
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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