BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0569 (665 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 27 3.2 SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 26 4.2 SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 5.6 SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 26 5.6 SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.4 SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.4 SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 7.4 SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 25 9.8 SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 9.8 SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 9.8 SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||... 25 9.8 >SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizosaccharomyces pombe|chr 2|||Manual Length = 561 Score = 26.6 bits (56), Expect = 3.2 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = -3 Query: 447 KHNHNTSFARKR*NMPSHSDQLIKHTSQNFSSSNNCNTNIY---RLFNTHIIFNFIF 286 K N N S +P + LI +TSQN+S NN ++ +Y R F+T +F F Sbjct: 154 KENPNISVLE---TLPDSTSYLI-NTSQNYSLRNNVSSFVYEDSRAFSTEEPLDFEF 206 >SPBC36.01c |||spermidine family transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 580 Score = 26.2 bits (55), Expect = 4.2 Identities = 9/33 (27%), Positives = 19/33 (57%) Frame = -1 Query: 338 IQIYTDYLTHILYLILFSSTYVFTFTNHYPINV 240 + +Y ++ I+YL+L + +F H+P+ V Sbjct: 375 VSLYCSFVYAIIYLLLEAYPVIFQEGRHFPLGV 407 >SPBC947.06c |||spermidine family transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 498 Score = 25.8 bits (54), Expect = 5.6 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = -1 Query: 356 AVPITA-IQIYTDYLTHILYLILFSSTYVFTFTNHY 252 A PI I ++ Y+ ILYL+L + Y F T ++ Sbjct: 286 ATPIVFFIAMFASYVYGILYLVLTTIPYTFGMTKNW 321 >SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces pombe|chr 1|||Manual Length = 299 Score = 25.8 bits (54), Expect = 5.6 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +2 Query: 290 IKLNIICVLNNLYIFVLQLLE 352 I LNI+CV+ ++IF QL++ Sbjct: 224 IHLNILCVIAQMFIFREQLID 244 >SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 394 Score = 25.4 bits (53), Expect = 7.4 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = +3 Query: 12 LNLTN*GSIPLKTSIVNH*NKIMECGFEKGTIKLDSIRNVFYSGQIVTGSVNFTLDRP 185 LNL ++P++T+ N+ KI++C G I L S N QI G +P Sbjct: 107 LNLYGGYNVPMETNPFNNWAKIVDC----GDIPLTSYDNAVAIKQIENGHFELLTRKP 160 >SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 115 Score = 25.4 bits (53), Expect = 7.4 Identities = 10/33 (30%), Positives = 19/33 (57%) Frame = +2 Query: 479 VIIKYTAISVRELKTIFLSMFYINFSLTEAYWF 577 ++ K T+I++ KT+ + F++ AYWF Sbjct: 77 IVNKTTSIALALFKTLAVISFFLLIGCLFAYWF 109 >SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1210 Score = 25.4 bits (53), Expect = 7.4 Identities = 8/20 (40%), Positives = 14/20 (70%) Frame = -3 Query: 396 HSDQLIKHTSQNFSSSNNCN 337 H + + HT+Q+F S++ CN Sbjct: 485 HPEVIASHTAQSFKSTHYCN 504 >SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||Manual Length = 426 Score = 25.0 bits (52), Expect = 9.8 Identities = 9/26 (34%), Positives = 20/26 (76%) Frame = +3 Query: 96 KGTIKLDSIRNVFYSGQIVTGSVNFT 173 K T+++ + R++F+SGQI+ ++ +T Sbjct: 269 KTTLEVHTDRSLFFSGQIIDFTICYT 294 >SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1004 Score = 25.0 bits (52), Expect = 9.8 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -3 Query: 144 DQNKTHFLLSPTLWCL 97 D N+ F L+P LWCL Sbjct: 34 DLNRFGFSLNPVLWCL 49 >SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosaccharomyces pombe|chr 2|||Manual Length = 660 Score = 25.0 bits (52), Expect = 9.8 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = -3 Query: 567 ASVSEKFI*NILRNIVFNSRTDIAVYL-IMTSLFTSALFINKHNHNTSFARKR*NMPSHS 391 A++S F N+ N +N ++ IAV I L T + + H RK Sbjct: 401 ATISNDF--NLKGNGRYNEKSQIAVPSEIRVQLSTLDAILLQFEH----LRKELTQARKE 454 Query: 390 DQLIKHTSQNFSSSNN 343 Q+++HTSQN +N Sbjct: 455 IQILRHTSQNGDQESN 470 >SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3|||Manual Length = 265 Score = 25.0 bits (52), Expect = 9.8 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 635 NFLYCSWMQIAYSTL*LIN*TSKPQSVKNLYKTYSEILFLIRGQI 501 N YCS Y++L ++ TS ++KN TYS L G + Sbjct: 188 NTKYCSLYDRGYTSLGGVSDTSPNPALKNPDGTYSPAYLLSDGSL 232 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,683,609 Number of Sequences: 5004 Number of extensions: 55848 Number of successful extensions: 145 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 140 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 145 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 303841898 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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