Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0569
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)                36   0.039
SB_16909| Best HMM Match : Peptidase_S8 (HMM E-Value=8.7)              28   7.9  
SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
          Length = 1139

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 259 LVNVKTYVLENKIKYNMCVK*SVYICIAVIGTAEVLRCMLYQLVGMRGHILS-LSCKASV 435
           L+ +K ++ + K K  + VK SVY C++     + +RC L+  V   G I   L CK+ V
Sbjct: 53  LLRIKMFICDRKAKLFLPVKTSVYRCVS--KEHKNMRCFLFHSVSTSGEIFEILICKSHV 110

Query: 436 V 438
           +
Sbjct: 111 I 111


>SB_16909| Best HMM Match : Peptidase_S8 (HMM E-Value=8.7)
          Length = 301

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 188 NWSI*RKIYTSRYNLTRIKHISY*VQLYGAFFETTFHYF 72
           NW+     YT +Y   R K + Y + +Y    +T  +YF
Sbjct: 137 NWAAAMLDYTKKYYNNRTKSLDYSISVYAKAKDTLKYYF 175


>SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 352 TAEVLRCMLY-QLVGMRGHILSLSCKASV 435
           T E+ RC+L  +  G+R H   LSC+ SV
Sbjct: 291 TVELARCLLLVEQTGVRAHFGQLSCERSV 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,705,900
Number of Sequences: 59808
Number of extensions: 374621
Number of successful extensions: 1148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)