Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0569
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    30   1.7  
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    30   1.7  
Z83217-6|CAD59136.1|  128|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
           glutamate receptor protein1 protein.
          Length = 1025

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 393 SDQLIKHTSQNFSSSNNCNTNIYRLFNTHIIFNFIFQ 283
           +D  +++ S NFS     N+N+Y+ F  H+  + +F+
Sbjct: 689 TDPRLRNPSANFSFGTVLNSNVYQYFKRHVELSSMFR 725


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
           ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 393 SDQLIKHTSQNFSSSNNCNTNIYRLFNTHIIFNFIFQ 283
           +D  +++ S NFS     N+N+Y+ F  H+  + +F+
Sbjct: 689 TDPRLRNPSANFSFGTVLNSNVYQYFKRHVELSSMFR 725


>Z83217-6|CAD59136.1|  128|Caenorhabditis elegans Hypothetical
           protein C10C6.7a protein.
          Length = 128

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 384 LIKHTSQNFSSSNNCNTNIYRLFNTHIIF 298
           +I  TS NFS+  NCN+N    + +H+++
Sbjct: 99  IISSTSDNFSNYFNCNSNSSLCWCSHVLY 127


>Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical
           protein F41E7.1 protein.
          Length = 516

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 325 VYICIAVIGTAEVLRCMLYQLVGMRGHI 408
           V++CIAVI    ++R +L  LV +  HI
Sbjct: 370 VFLCIAVIAIGLLVRTILVMLVTLSSHI 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,905
Number of Sequences: 27780
Number of extensions: 303944
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)