Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0567
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 169 3e-43
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 138 1e-33
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 84 2e-17
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 69 7e-13
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 44 2e-05
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 41 2e-04
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 41 2e-04
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 40 3e-04
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 38 0.001
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 36 0.008
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 35 0.010
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 34 0.018
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 32 0.072
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 31 0.17
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 31 0.22
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 31 0.22
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 29 0.67
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 28 1.2
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 2.7
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 4.7
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 26 4.7
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 4.7
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 26 6.3
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 26 6.3
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 8.3
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 8.3
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 169 bits (411), Expect = 3e-43
Identities = 76/84 (90%), Positives = 81/84 (96%)
Frame = +1
Query: 256 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELM 435
IGFNVETVEY+NISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRERI EA EEL
Sbjct: 49 IGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQ 108
Query: 436 RMLSEDELRDAVLLIFANKQDLPN 507
RML+EDELRDA+LL+FANKQDLPN
Sbjct: 109 RMLNEDELRDALLLVFANKQDLPN 132
Score = 93.9 bits (223), Expect = 2e-20
Identities = 41/46 (89%), Positives = 43/46 (93%)
Frame = +3
Query: 510 MNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 647
MNAAEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLS LKN
Sbjct: 134 MNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
Score = 81.8 bits (193), Expect = 9e-17
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = +2
Query: 113 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPIL 259
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIP +
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 49
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 138 bits (333), Expect = 1e-33
Identities = 61/83 (73%), Positives = 70/83 (84%)
Frame = +1
Query: 256 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELM 435
+GFNVETV YKNI F VWDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EAR+EL
Sbjct: 53 VGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELH 112
Query: 436 RMLSEDELRDAVLLIFANKQDLP 504
R++S+ E+RD +LL+ ANKQDLP
Sbjct: 113 RIISDREMRDCLLLVLANKQDLP 135
Score = 64.5 bits (150), Expect = 1e-11
Identities = 31/43 (72%), Positives = 34/43 (79%)
Frame = +2
Query: 125 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP 253
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIP
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIP 51
Score = 54.8 bits (126), Expect = 1e-08
Identities = 24/45 (53%), Positives = 31/45 (68%)
Frame = +3
Query: 510 MNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 644
++ A+ITD L L L++R W +Q TCA +GDGL EGL WLS K
Sbjct: 138 LSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 84.2 bits (199), Expect = 2e-17
Identities = 34/81 (41%), Positives = 55/81 (67%)
Frame = +1
Query: 259 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMR 438
GF + T+E + + FT+WD+GGQ +R W++YF++T+ +I+VVDS D R+ E R L
Sbjct: 49 GFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQE 108
Query: 439 MLSEDELRDAVLLIFANKQDL 501
+L E++L +L+ ANK D+
Sbjct: 109 LLVEEKLLFTSILVLANKSDV 129
Score = 33.9 bits (74), Expect = 0.024
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +2
Query: 155 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI 250
++E+R+L++GLD AGKTTIL K L E V +
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEV 44
Score = 31.1 bits (67), Expect = 0.17
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +3
Query: 510 MNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 644
+++ EI+ L + ++ +W I + A +G + + + WL+N LK
Sbjct: 133 LSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 68.9 bits (161), Expect = 7e-13
Identities = 31/78 (39%), Positives = 46/78 (58%)
Frame = +1
Query: 271 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSE 450
E + N+ FT +D+GG + R LWR YF G++++VD D ER+ E++ EL +L+
Sbjct: 57 EELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAM 116
Query: 451 DELRDAVLLIFANKQDLP 504
+EL LI NK D P
Sbjct: 117 EELARVPFLILGNKIDAP 134
Score = 32.7 bits (71), Expect = 0.055
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 158 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPIL 259
K ++L +GLD AGKTT+L+ LK + P L
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTL 52
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 256 IGFNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREE 429
+ F + T E K + +WD GQ++ R + Y++ G+I V D D++ ++
Sbjct: 43 VDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQW 102
Query: 430 LMRMLSEDELRDAVLLIFANKQDL 501
L + + L+ NK D+
Sbjct: 103 LQE-IDRYAVEGVNRLLVGNKSDM 125
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = +1
Query: 280 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDEL 459
+ K I +WD GQ+K R + R+Y++ G + V D +++ E L + +
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPS 117
Query: 460 RDAVLLIFANKQDLPNE 510
V+L +K DL N+
Sbjct: 118 TICVVLA-GSKSDLQNQ 133
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 256 IGFNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAR 423
I F + T+E K I +WD GQ++ R + Y++ G++ + D D++ R
Sbjct: 44 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 40.3 bits (90), Expect = 3e-04
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +1
Query: 241 NNNSHIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER--IG 414
+ NS +G + + ++ ++DVGGQ R W + F+N +IF V ND ++
Sbjct: 175 SRNSTLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYE 234
Query: 415 EAREELMRMLSEDELRDAVL 474
A E R++ L D+++
Sbjct: 235 RAAPERNRLVESISLFDSII 254
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 37.9 bits (84), Expect = 0.001
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Frame = +1
Query: 235 NCNNNSHIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 402
N + S IG T ++ K I +WD GQ++ R + Y++ G + V D +
Sbjct: 36 NIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQ 95
Query: 403 ERIGEAREELMRMLSEDELRDAVLLIFANKQDL 501
L + L E + V+++ NK DL
Sbjct: 96 SSFDNVGRWL-KELREHADSNIVIMLVGNKTDL 127
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 35.5 bits (78), Expect = 0.008
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +1
Query: 280 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDEL 459
E ++ +WD GQ++ + L Y++N I V D + +A+ ++ L
Sbjct: 60 ENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAP 118
Query: 460 RDAVLLIFANKQDLPNE 510
V+ + NK DL E
Sbjct: 119 EGIVIALAGNKLDLAQE 135
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 35.1 bits (77), Expect = 0.010
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Frame = +1
Query: 259 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF----------VVDSNDRER 408
G + ET + +DVGGQ R W H F+N L+F +V+ N +
Sbjct: 223 GISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDNSGNQ 282
Query: 409 IGEAREELMRMLSEDELRDAVLLIFANKQDL 501
+ EA + + ++ +++F NK DL
Sbjct: 283 MQEALLLWDSICNSSWFSESAMILFLNKLDL 313
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +2
Query: 152 GKKEMRILMVGLDAAGKTTILYKLKL 229
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 34.3 bits (75), Expect = 0.018
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = +1
Query: 277 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDE 456
+E + + +WD GQ++ R L Y +++ I V D + E+ + + +
Sbjct: 55 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAER 113
Query: 457 LRDAVLLIFANKQDLPNE 510
D ++++ NK DL ++
Sbjct: 114 GDDVIIVLVGNKTDLADK 131
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 32.3 bits (70), Expect = 0.072
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +1
Query: 277 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLS 447
V+ K ++ +WD GQ++ + L +++ + V D N+ E + R+E + S
Sbjct: 52 VDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQAS 111
Query: 448 EDELRDAVLLIFANKQDLPNE 510
++ NK D+ +
Sbjct: 112 PSNPETFPFILLGNKVDVEEQ 132
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = +1
Query: 289 NISFTVWDVGGQDKIRPLW-----RHYFQNTQGLIFVVDSNDRE 405
N+ +WD GGQ+ + H F+N Q LI+V D RE
Sbjct: 50 NLVLNLWDCGGQEAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 256 IGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE 426
+ F +T+ +N I+F++WD+GGQ + + + ++F+ D + + + +E
Sbjct: 45 VNFMEKTISIRNTEITFSIWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 277 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLS 447
V+ K ++ +WD GQ++ + L +++ + V + N+ + + R+E + S
Sbjct: 52 VDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTS 111
Query: 448 EDE 456
+DE
Sbjct: 112 QDE 114
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 29.1 bits (62), Expect = 0.67
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = -1
Query: 207 VVLPAASKPTINILISFLPKRPLNKFANIFPILNYYEYNFQKQSRIREKTQHQ*IPNNSR 28
+++PA P + I++ +L +R NK NI I+NY + EK N ++
Sbjct: 246 IIMPAVMTPAV-IILMYL-ERQANKDENIKKIINY---------QTEEK-------NKNK 287
Query: 27 MSKWRRTWK 1
SKW++ WK
Sbjct: 288 QSKWQKLWK 296
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 283 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 402
+ I F VWD GQ+K+ L Y+ Q I + D R
Sbjct: 55 FGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 348 PPQWSDFVLASNIPHSKTNVFVFYCLHIKANMGIVVT 238
PP+ SDF++ S H + N F F+ ++ + ++++
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFHETLLRYRLNLIMS 293
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 170 ILMVGLDAAGKTTILYKLKL 229
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 482 LRINRICQTNERSRDNRQTGSAFAAQP*LVHPSDMRHFRRRTVRGSRLAL 631
+RIN + N+ R +G A A H SD+R + V GS ++
Sbjct: 167 IRINILPNGNDNFIKKRNSGFALAPIACYNHTSDLRKLLKHKVTGSNASI 216
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 134 LFKGLFGKKEMRILMVGLDAAGKTTI 211
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 155 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPI 256
KK++ + ++G AGK++I+ L+ ++ PI
Sbjct: 308 KKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPI 341
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 277 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI--FVVDSND 399
V+ +I ++WD GQ++ L + +T ++ F VDS D
Sbjct: 56 VDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRD 98
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 158 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIP 253
KE+R+++ G GK++++ L + VT+IP
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIP 33
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 616 PSYSPSPEVAHVAWMYQL 563
P+ SP PEV+H W+ L
Sbjct: 16 PNSSPDPEVSHKLWVSSL 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,831
Number of Sequences: 5004
Number of extensions: 71004
Number of successful extensions: 244
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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