Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0566
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   2.9  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   5.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   5.1  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   6.7  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 62  NLIHLYVTDKCFKIFIR 12
           NL+++Y  D  F +F+R
Sbjct: 156 NLVYVYCCDNNFNVFLR 172


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 498 KAR*PNNVALDAIDGGAPP 442
           K + P ++ +D  DGG PP
Sbjct: 24  KGKMPIDLVIDERDGGKPP 42


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 498 KAR*PNNVALDAIDGGAPP 442
           K + P ++ +D  DGG PP
Sbjct: 180 KGKMPIDLVIDERDGGKPP 198


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 532 LKLILIQCRV*VICHGSTLATTTIQF 609
           LK  L Q R   + HG T+  TT+ F
Sbjct: 164 LKAQLWQNRYETVAHGMTVQKTTLFF 189


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,328
Number of Sequences: 336
Number of extensions: 2920
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)