Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0566
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.1  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   4.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.3  
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha...    25   9.6  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.6  

>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = +3

Query: 114 ILVFKILNAQKTSKLDSQQILF-ITSKRKY----LSWQSIRDYEPFLFF 245
           I + ++ N     K  +  IL  ITSKR      ++WQ++   EPFL +
Sbjct: 43  ISILRVFNKPPIKKFHNSNILKDITSKRNATPAKIAWQAMTTREPFLVY 91


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 472 SYVVWSTSFCRPRLQCQQLYLKLI 543
           S  +WS++  RP L CQ ++ K I
Sbjct: 302 SLSIWSSALPRPLLSCQNVFQKSI 325


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = +2

Query: 392 PTFG----GALSPGRNSTAMPGGAPPSMASRATLFGQ 490
           P FG    G L   RN+T   GG    M+S   +FGQ
Sbjct: 57  PLFGSNTNGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ 93


>SPBC21.04 |med8|sep15|mediator complex subunit
           Med8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/56 (25%), Positives = 31/56 (55%)
 Frame = +1

Query: 148 HQNWTVNKSCLLHRSGNIYLGRVYAIMNHSYSL*NSEQGLIIGYGKLEFSTSASKP 315
           HQ+ +++    +H++ NI L +++++ N+  +  ++ Q   I Y  LEF     +P
Sbjct: 35  HQSESLSPWPTIHKNFNILLSQIHSLSNNLAAHSHTLQTTSI-YPSLEFPVKEQEP 89


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 651 GPEVVVLMCHHLHQKLNGSCCQR*TVTDYSY 559
           G +V V       +++ G CCQ   + +YSY
Sbjct: 141 GIDVSVRFSRAAREQIEGWCCQNCDILNYSY 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,905
Number of Sequences: 5004
Number of extensions: 43379
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)