Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0566
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    30   1.7  
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec...    28   6.7  
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph...    28   6.7  
Z83231-2|CAB05750.1|  357|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 119 QYKWYIKLSSRKTLL*NTVNLIHLYVTDKCFKIF 18
           QYK  +KLS     + N +N+IH +V DK  K F
Sbjct: 98  QYKLIVKLSHVAADIDNEINVIHKFVRDKYEKRF 131


>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical protein
            C03D6.4 protein.
          Length = 1390

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 398  FGGALSPGRNSTAMPGGAPPSMASRATLFGQRAFAD 505
            FGG  +P  N++   GGA  + A  +++FG  A A+
Sbjct: 1344 FGGGATPQTNTSIFGGGANTTPAPTSSVFGGGASAN 1379


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 386 VTPTFGGALSPGRNSTAMPGGAPP 457
           V P   GA  PG+    MPG  PP
Sbjct: 277 VAPGMPGAFPPGQGGPGMPGSFPP 300


>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like receptor
            TOL-1 protein.
          Length = 1221

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 175  CLLHRSGNIYLGRVYAIMNHSYSL*NSEQGLII 273
            CLLHR G  Y   ++AI +   +  +S Q LI+
Sbjct: 1086 CLLHRDGPTYCSNLHAISDELIAQMDSSQCLIL 1118


>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosophila)
            family protein 1 protein.
          Length = 1221

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 175  CLLHRSGNIYLGRVYAIMNHSYSL*NSEQGLII 273
            CLLHR G  Y   ++AI +   +  +S Q LI+
Sbjct: 1086 CLLHRDGPTYCSNLHAISDELIAQMDSSQCLIL 1118


>Z83231-2|CAB05750.1|  357|Caenorhabditis elegans Hypothetical
           protein F57G9.2 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 271 LSVLVHYFIKNKNGS*SRILCQDKYFRFDVINKIC 167
           LSVLV  FIK+ N S  + +C  K  R   +++ C
Sbjct: 204 LSVLVFLFIKHTNQSLLKEICNPKRTRIFTVSQQC 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,735,651
Number of Sequences: 27780
Number of extensions: 256651
Number of successful extensions: 626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)