Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0565
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    29   0.53 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.1  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   6.5  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   6.5  
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    25   8.6  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   8.6  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    25   8.6  

>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 6   PATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYM 113
           PA +LG    D D+M KPPR  +  +IS  L  R +
Sbjct: 728 PAQSLGVESVDEDVMMKPPRPRNAPIISVQLLQRVL 763


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 174  SPYGPQMTYWQLTHHLQCISGGDEFKGLTAKC 269
            S +  +M    +TH+L+C+S  DE   L ++C
Sbjct: 2240 STFRSKMLTQSITHYLKCLSESDENDVLISRC 2271


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 544 LHPAVPRVLRTSYGYPLVERQRRHLEHG 461
           LHP+    L   YGYP+V+ Q   L  G
Sbjct: 179 LHPSFDTQLWNIYGYPVVDLQLSVLSKG 206


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 204 QLTHHLQCISGGDEFKGLTAK 266
           QL +HLQ I+   EF G+ AK
Sbjct: 328 QLANHLQVIANAFEFSGMYAK 348


>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 92  MAVLQIHGYRWLRRCGHSRRCLL--VVHVLPVRTSNDI 199
           M +L  HG+       HSR C++  ++   P+R   DI
Sbjct: 157 MKILHEHGFPVPAPIDHSRHCIIMEMIDAFPLRAVTDI 194


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 659 MMMPKKTAHMSTIHCMPWSQSRTVRVSPSEILRA 558
           M  P   A  + + C P   SR +  +PSE++RA
Sbjct: 482 MSPPTNVARQNFVLCDPDEPSRVLFSNPSEMIRA 515


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 280 SPDDDGSLSAGHNRDVKRHEQ 342
           SPDD   LSAG +R V  HEQ
Sbjct: 587 SPDDRYILSAGRDRLVCLHEQ 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,261
Number of Sequences: 5004
Number of extensions: 60094
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)