Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0565
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892... 101 6e-22
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960... 97 2e-20
05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,102... 96 2e-20
12_02_1157 + 26565040-26565081,26565189-26565262,26565343-265654... 29 3.9
05_06_0051 - 25190803-25191216,25191301-25191891,25193248-251933... 28 9.0
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 28 9.0
>03_05_1014 - 29687343-29687410,29688054-29688191,29689246-29689294,
29689623-29689728,29690184-29690332,29690840-29690921,
29691308-29691360,29691644-29691729,29691855-29691909,
29692179-29692579,29693564-29693660,29694191-29694322,
29694426-29694476,29694659-29694751,29694917-29694992,
29695711-29695856,29696009-29696043,29696056-29696107,
29696290-29696401,29696617-29696813,29697456-29697560,
29697667-29697819,29698317-29698424,29698608-29698752,
29699374-29699432,29701397-29701441,29701677-29701730,
29701901-29702113,29702873-29702958,29704492-29704572,
29704670-29704729,29705599-29705644,29706212-29706286,
29706376-29706512,29708306-29708366,29708726-29708743,
29709710-29709743,29709811-29709902,29709997-29710029
Length = 1260
Score = 101 bits (242), Expect = 6e-22
Identities = 42/74 (56%), Positives = 58/74 (78%)
Frame = +2
Query: 254 FDCKVFTDPHPMTMALSVLVTIEMLNAMNSLSENQSLVTMPPWSNLWLVGSMALSFTLHF 433
+ C +F D HP T++++VLV +EM NA+N+LSENQSL+ + PWSNLWLVGS+ L+ LH
Sbjct: 1104 YPCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLAIHPWSNLWLVGSIVLTMLLHI 1163
Query: 434 VILYVEVLSAVFQV 475
+LY+E LSA+F V
Sbjct: 1164 SVLYIEPLSALFSV 1177
Score = 46.0 bits (104), Expect = 3e-05
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 66 KADEGLISGWLFFRYMXXXXXXXXXXXXXXSWWFMYSPYGPQMTYWQL 209
+ +E +++GWLFFRY+ WWF+YS GP++ Y +L
Sbjct: 999 EVNEAVVNGWLFFRYLIIGAYVGLATIAGFVWWFVYSEDGPRLPYSEL 1046
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 3 LPATALGFNPPDLDIMDKPPR 65
LPATA+GFN PD +IM PR
Sbjct: 846 LPATAIGFNKPDSNIMTVKPR 866
>03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,
9608898-9609275,9609380-9609658,9610044-9610168,
9610269-9610335,9610582-9612006
Length = 1062
Score = 96.7 bits (230), Expect = 2e-20
Identities = 43/79 (54%), Positives = 62/79 (78%)
Frame = +2
Query: 290 TMALSVLVTIEMLNAMNSLSENQSLVTMPPWSNLWLVGSMALSFTLHFVILYVEVLSAVF 469
T++LSVLV IEM N++N+LSE+ SL++MPPW N WL+ +M++SF LHF+ILYV L+ VF
Sbjct: 955 TLSLSVLVAIEMFNSLNALSEDGSLLSMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVF 1014
Query: 470 QVTPLSLDEWVTV*SSQYP 526
+ PLS +EW+ V + +P
Sbjct: 1015 GIVPLSFNEWLLVIAVAFP 1033
Score = 65.3 bits (152), Expect = 5e-11
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +3
Query: 6 PATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYM 113
PATALGFNPPD DIM KPPR++D+ LI+ W+ FRYM
Sbjct: 836 PATALGFNPPDKDIMKKPPRRSDDSLITPWILFRYM 871
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +1
Query: 523 PVVLLDEVLKFVAR 564
PVVL+DEVLKFV R
Sbjct: 1033 PVVLIDEVLKFVGR 1046
>05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,
1022753-1023031,1023402-1023779,1024079-1024188,
1024394-1024622,1024725-1025303
Length = 1055
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/73 (58%), Positives = 59/73 (80%)
Frame = +2
Query: 290 TMALSVLVTIEMLNAMNSLSENQSLVTMPPWSNLWLVGSMALSFTLHFVILYVEVLSAVF 469
T++LSVLV IEM N++N+LSE+ SL+ MPPW N WL+ +M++SF LHF+ILYV L+ VF
Sbjct: 947 TLSLSVLVAIEMFNSLNALSEDTSLLRMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVF 1006
Query: 470 QVTPLSLDEWVTV 508
+ PLSL+EW+ V
Sbjct: 1007 GIVPLSLNEWLLV 1019
Score = 65.3 bits (152), Expect = 5e-11
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +3
Query: 6 PATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYM 113
PATALGFNPPD DIM KPPRK+D+ LI+ W+ FRY+
Sbjct: 828 PATALGFNPPDKDIMKKPPRKSDDSLITPWILFRYL 863
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 517 SVPVVLLDEVLKFVAR 564
++PVVL+DEVLKFV R
Sbjct: 1023 ALPVVLIDEVLKFVGR 1038
>12_02_1157 +
26565040-26565081,26565189-26565262,26565343-26565460,
26565547-26565617,26565704-26565869,26565946-26566145,
26566669-26566880,26567404-26567522,26567952-26568053,
26568144-26568253,26568340-26568427,26568574-26568606,
26568635-26568834,26568916-26569120
Length = 579
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 3 LPATALGFNPPDLDIMDKPPRKADEGLISG 92
+P AL + DL++ K RKAD GL+SG
Sbjct: 432 IPEVALYNSKADLEVKCKEMRKADIGLVSG 461
>05_06_0051 -
25190803-25191216,25191301-25191891,25193248-25193317,
25193392-25193443,25195368-25195440,25195557-25195646
Length = 429
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 568 SCARRI*ALHPAVPRVLRTSYGYPLVERQRRHLEHGRKNLDVEDDEMKSEGE 413
S RR+ AL +PR + P + R RH + + EDDE + + +
Sbjct: 150 SLLRRVAALESTLPRCFASPPVPPPLHRNPRHRPRAAAHREEEDDEEEEDDD 201
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1
Query: 427 SFRHPLRRGSFGRV 468
SFRHPL RG+FG V
Sbjct: 499 SFRHPLGRGAFGTV 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,396,348
Number of Sequences: 37544
Number of extensions: 498589
Number of successful extensions: 1411
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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