Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0565
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.034
SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59) 29 4.0
SB_51317| Best HMM Match : E-MAP-115 (HMM E-Value=0.58) 29 5.2
SB_40974| Best HMM Match : KE2 (HMM E-Value=0.88) 29 5.2
SB_16001| Best HMM Match : LRR_1 (HMM E-Value=0.035) 29 5.2
SB_8775| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_46169| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44) 28 9.1
>SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1154
Score = 35.9 bits (79), Expect = 0.034
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +2
Query: 278 PHPMTMALSVLVTIEMLNAMNSLSENQSLVTMPPWSNLWLVGSMALSFTLHFVILYVEVL 457
P TM + V +M NA++ S+ +S+ + +N + ++ S F+++Y L
Sbjct: 849 PRDTTMTFTCFVFFDMFNALSCRSQEKSIFQVGFLTNRMFLYAVGGSLIGQFLVIYFAPL 908
Query: 458 SAVFQVTPLSLDE 496
AVFQ L + +
Sbjct: 909 QAVFQTEALHITD 921
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 6 PATALGFNPPDLDIMDKPPRKADEGLIS 89
PA +LG P D D+M +PPR +I+
Sbjct: 789 PAQSLGVEPVDSDVMRRPPRNVKSPMIT 816
>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1311
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3
Query: 6 PATALGFNPPDLDIM 50
PATAL FNPPD DIM
Sbjct: 805 PATALSFNPPDSDIM 819
>SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1035
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 390 KFDQGGMVTRDWFSDKLFMAFN 325
KFD+ G++ R WFSD FN
Sbjct: 607 KFDKHGVMGRKWFSDSTVQQFN 628
>SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59)
Length = 810
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 591 CPRLAPRHAMDCAHVGRLLWHHHLRTTISRPARVSRHPV 707
C + P H+ +LL HH L I R V+++PV
Sbjct: 514 CSQSVPSHSQTPLKEDKLLQHHRLVLEIGRAKNVNKNPV 552
>SB_51317| Best HMM Match : E-MAP-115 (HMM E-Value=0.58)
Length = 696
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 490 ERQRRHLEHGRKNLDVEDDEMKSEGERHGADEPQ 389
E QRRH+ G +++ ED + HGA P+
Sbjct: 280 ELQRRHIHVGSRDVAEEDTQSTGLASSHGAASPE 313
>SB_40974| Best HMM Match : KE2 (HMM E-Value=0.88)
Length = 106
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 490 ERQRRHLEHGRKNLDVEDDEMKSEGERHGADEPQ 389
E QRRH+ G +++ ED + HGA P+
Sbjct: 66 ELQRRHIHVGSRDVAEEDTQSTGLASSHGAASPE 99
>SB_16001| Best HMM Match : LRR_1 (HMM E-Value=0.035)
Length = 277
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 529 PRVLRTSYGYPLVERQRRHLEHGRKNLDVED 437
PRV R GY L ++ LE G +N D ED
Sbjct: 103 PRVRRAPKGYKLEAVRKLELEEGMENSDEED 133
>SB_8775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 666 SVDDDAKEDGPHEHNPLHAVEPV*DSARL 580
SV D+ +D +HNPLH P +A+L
Sbjct: 427 SVTDETNKDPVDKHNPLHNASPTPPTAQL 455
>SB_46169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 260 SQTLKFITTADTL*VMSELPVCHLRSVRGVHEPPGGSADC 141
SQ FI+ D L ++PVC+L G PG ++ C
Sbjct: 24 SQPGVFISIIDLLDEDQDMPVCNLTKDAGARVSPGDNSGC 63
>SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2905
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 508 MKFSVPVVLLDEVLKFVARKISDGETRTVLDWLH-GMQWIV 627
+KF L ++ +++ I +G T LDW H M W++
Sbjct: 1221 LKFKRRTRFLGFFVQVLSKAIDEGMMETALDWTHDAMTWVI 1261
>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
Length = 1021
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -2
Query: 508 YGYPLVERQRRHLEHGRKNLDVEDDEMKSEGERHGADEPQV*PGR 374
+G VE + ++HG+KN++ E +M+ + G +E + G+
Sbjct: 270 HGKKNVEHEEGDMQHGKKNMEHEKGDMQHGKKNMGHEEGDMQHGK 314
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,347,579
Number of Sequences: 59808
Number of extensions: 525981
Number of successful extensions: 1494
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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