Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0565
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplas...   109   2e-24
At1g07810.1 68414.m00846 calcium-transporting ATPase 1, endoplas...   102   3e-22
At1g07670.1 68414.m00824 calcium-transporting ATPase 4, endoplas...   102   3e-22
At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplas...   100   2e-21
At3g59680.1 68416.m06658 expressed protein                             30   1.4  
At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma m...    30   1.4  
At2g23840.1 68415.m02848 HNH endonuclease domain-containing prot...    30   1.9  
At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma m...    29   4.3  
At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma m...    29   4.3  
At5g42470.1 68418.m05170 expressed protein low similarity to BRE...    28   5.7  

>At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplasmic
            reticulum-type (ACA6) (ECA3) nearly identical to
            SP|Q9SY55 Calcium-transporting ATPase 3, endoplasmic
            reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
            contains InterPro Accession IPR006069: Cation
            transporting ATPase
          Length = 998

 Score =  109 bits (261), Expect = 2e-24
 Identities = 49/91 (53%), Positives = 65/91 (71%)
 Frame = +2

Query: 254  FDCKVFTDPHPMTMALSVLVTIEMLNAMNSLSENQSLVTMPPWSNLWLVGSMALSFTLHF 433
            + C +F D HP T+A++VLV +EM NA+N+LSENQSL+ + P SNLWLVGS+ L+  LH 
Sbjct: 872  YPCSIFEDRHPSTVAMTVLVVVEMFNALNNLSENQSLLVITPRSNLWLVGSIILTMLLHV 931

Query: 434  VILYVEVLSAVFQVTPLSLDEWVTV*SSQYP 526
            +ILYV  L+ +F VTPLS  EW  V    +P
Sbjct: 932  LILYVHPLAVLFSVTPLSWAEWTAVLYLSFP 962



 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 33/75 (44%), Positives = 44/75 (58%)
 Frame = +3

Query: 3    LPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYMXXXXXXXXXXXXXXSWWFMYSPY 182
            LPATA+GFN  D D+M   PRK  E +++GWLFFRY+               WWF+YS  
Sbjct: 791  LPATAIGFNKQDSDVMKAKPRKVGEAVVTGWLFFRYLVIGVYVGLATVAGFIWWFVYSDG 850

Query: 183  GPQMTYWQLTHHLQC 227
            GP++TY +L +   C
Sbjct: 851  GPKLTYSELMNFETC 865


>At1g07810.1 68414.m00846 calcium-transporting ATPase 1, endoplasmic
            reticulum-type (ECA1) identical to SP|P92939
            Calcium-transporting ATPase 1, endoplasmic reticulum-type
            (EC 3.6.3.8) {Arabidopsis thaliana); contains InterPro
            Accession IPR006069: Cation transporting ATPase
          Length = 1061

 Score =  102 bits (244), Expect = 3e-22
 Identities = 48/79 (60%), Positives = 62/79 (78%)
 Frame = +2

Query: 290  TMALSVLVTIEMLNAMNSLSENQSLVTMPPWSNLWLVGSMALSFTLHFVILYVEVLSAVF 469
            T++LSVLV IEM N++N+LSE+ SLVTMPPW N WL+ +MA+SF LHFVILYV  L+ VF
Sbjct: 951  TLSLSVLVAIEMFNSLNALSEDGSLVTMPPWVNPWLLLAMAVSFGLHFVILYVPFLAQVF 1010

Query: 470  QVTPLSLDEWVTV*SSQYP 526
             + PLSL+EW+ V +   P
Sbjct: 1011 GIVPLSLNEWLLVLAVSLP 1029



 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
 Frame = +3

Query: 6    PATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYMXXXXXXXXXXXXXXSWWFMYSPY- 182
            PATALGFNPPD DIM KPPR++D+ LI+ W+ FRYM                W+ +S + 
Sbjct: 832  PATALGFNPPDKDIMKKPPRRSDDSLITAWILFRYMVIGLYVGVATVGVFIIWYTHSSFM 891

Query: 183  -------GPQM-TYWQLTHHLQCIS 233
                   G  + +Y QL H  QC S
Sbjct: 892  GIDLSQDGHSLVSYSQLAHWGQCSS 916



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +1

Query: 517  SVPVVLLDEVLKFVAR 564
            S+PV+L+DEVLKFV R
Sbjct: 1027 SLPVILIDEVLKFVGR 1042


>At1g07670.1 68414.m00824 calcium-transporting ATPase 4, endoplasmic
           reticulum-type (ECA4) identical to SP|Q9XES1
           Calcium-transporting ATPase 4, endoplasmic
           reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 775

 Score =  102 bits (244), Expect = 3e-22
 Identities = 48/79 (60%), Positives = 62/79 (78%)
 Frame = +2

Query: 290 TMALSVLVTIEMLNAMNSLSENQSLVTMPPWSNLWLVGSMALSFTLHFVILYVEVLSAVF 469
           T++LSVLV IEM N++N+LSE+ SLVTMPPW N WL+ +MA+SF LHFVILYV  L+ VF
Sbjct: 665 TLSLSVLVAIEMFNSLNALSEDGSLVTMPPWVNPWLLLAMAVSFGLHFVILYVPFLAQVF 724

Query: 470 QVTPLSLDEWVTV*SSQYP 526
            + PLSL+EW+ V +   P
Sbjct: 725 GIVPLSLNEWLLVLAVSLP 743



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
 Frame = +3

Query: 6   PATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYMXXXXXXXXXXXXXXSWWFMYSPY- 182
           PATALGFNPPD DIM KPPR++D+ LI+ W+ FRYM                W+ ++ + 
Sbjct: 546 PATALGFNPPDKDIMKKPPRRSDDSLITAWILFRYMVIGLYVGVATVGVFIIWYTHNSFM 605

Query: 183 -------GPQM-TYWQLTHHLQCIS 233
                  G  + +Y QL H  QC S
Sbjct: 606 GIDLSQDGHSLVSYSQLAHWGQCSS 630



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +1

Query: 517 SVPVVLLDEVLKFVAR 564
           S+PV+L+DEVLKFV R
Sbjct: 741 SLPVILIDEVLKFVGR 756


>At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplasmic
            reticulum-type (ECA2) nearly identical to SP|O23087
            Calcium-transporting ATPase 2, endoplasmic reticulum-type
            (EC 3.6.3.8) {Arabidopsis thaliana}; contains InterPro
            Accession IPR006069: Cation transporting ATPase
          Length = 1054

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 48/91 (52%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
 Frame = +2

Query: 260  CKVFT--DPHPMTMALSVLVTIEMLNAMNSLSENQSLVTMPPWSNLWLVGSMALSFTLHF 433
            C  FT     PMT++L+VLV IEM N++N+LSE+ SL+TMPPW N WL+ +M +SF LH 
Sbjct: 938  CDYFTLGKVKPMTLSLTVLVAIEMFNSLNALSEDNSLLTMPPWRNPWLLVAMTVSFALHC 997

Query: 434  VILYVEVLSAVFQVTPLSLDEWVTV*SSQYP 526
            VILYV  L+ VF + PLS  EW  V    +P
Sbjct: 998  VILYVPFLANVFGIVPLSFREWFVVILVSFP 1028



 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = +3

Query: 6   PATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYM 113
           PATALGFNP D+DIM KPPRK+D+ LI  W+  RY+
Sbjct: 828 PATALGFNPADIDIMKKPPRKSDDCLIDSWVLIRYL 863


>At3g59680.1 68416.m06658 expressed protein 
          Length = 229

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = +2

Query: 455 LSAVFQVTPLSLDEWVTV*SSQYPWYCWMKCSNSSRARSPMVRRALS 595
           +S  F ++ LSL    ++  S + ++C+M+ S +S AR P  +RA++
Sbjct: 4   ISIFFSISWLSLSLNYSLTQSFFVFFCFMQDSKASPARKPWYQRAMA 50


>At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma
            membrane-type / Ca2+-ATPase, isoform 4 (ACA4) identical
            to SP|O22218 Calcium-transporting ATPase 4, plasma
            membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4)
            {Arabidopsis thaliana}
          Length = 1030

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +2

Query: 290  TMALSVLVTIEMLNAMNSLSENQSLVTMPPWSNLWLVGSMALSFTLHFVILYVEVLSAVF 469
            T+  +  V  ++ N +NS  E + +       N W V +  ++ T+ F ++ VE L A  
Sbjct: 919  TVIFNSFVFCQVFNEINS-REIEKINVFKGMFNSW-VFTWVMTVTVVFQVIIVEFLGAFA 976

Query: 470  QVTPLSLDEWV 502
               PLS   W+
Sbjct: 977  STVPLSWQHWL 987


>At2g23840.1 68415.m02848 HNH endonuclease domain-containing protein
           contains Pfam profile  PF01844: HNH endonuclease
          Length = 284

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -2

Query: 514 TSYGYPLVERQRRHLEHGRKNLDVED--DEMKSEGERHGAD 398
           +SY +P   ++ R L++  KNLD+++  DE   +G+  G +
Sbjct: 56  SSYSFPYKRKKIRDLDNTEKNLDIDEDNDEWDFDGDDDGLE 96


>At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma
            membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid
            envelope ATPase 1 (PEA1) identical to SP|Q37145
            Calcium-transporting ATPase 1, plasma membrane-type (EC
            3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
            ATPase 1) {Arabidopsis thaliana}; identical to cDNA
            envelope Ca2+-ATPase (PEA1) chloroplast gene encoding
            chloroplast protein GI:509809
          Length = 946

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = +2

Query: 290  TMALSVLVTIEMLNAMNSLSENQSLVTMPPWSNLWLVGSMALSFTLHFVILYVEVLSAVF 469
            T+  ++ V  ++ N ++S    +  V      N   V    L+ T+ F ++ +E+L    
Sbjct: 854  TLIFNIFVFCQVFNEISSREMEKIDVFKGILKNYVFVA--VLTCTVVFQVIIIELLGTFA 911

Query: 470  QVTPLSLDEWV 502
              TPL+L +W+
Sbjct: 912  DTTPLNLGQWL 922


>At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma
            membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid
            envelope ATPase 1 (PEA1) identical to SP|Q37145
            Calcium-transporting ATPase 1, plasma membrane-type (EC
            3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
            ATPase 1) {Arabidopsis thaliana}; identical to cDNA
            envelope Ca2+-ATPase (PEA1) chloroplast gene encoding
            chloroplast protein GI:509809
          Length = 1020

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = +2

Query: 290  TMALSVLVTIEMLNAMNSLSENQSLVTMPPWSNLWLVGSMALSFTLHFVILYVEVLSAVF 469
            T+  ++ V  ++ N ++S    +  V      N   V    L+ T+ F ++ +E+L    
Sbjct: 928  TLIFNIFVFCQVFNEISSREMEKIDVFKGILKNYVFVA--VLTCTVVFQVIIIELLGTFA 985

Query: 470  QVTPLSLDEWV 502
              TPL+L +W+
Sbjct: 986  DTTPLNLGQWL 996


>At5g42470.1 68418.m05170 expressed protein low similarity to BRE
           alpha b isoform [Homo sapiens] GI:16326573
          Length = 382

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 269 FTDPHPMTMALSVLVTIEMLNAMNSLSENQSLVTMPPWSNLWLVGSMA 412
           F+   P      +L + + LN  +S+    +L+T  PWS  W VG MA
Sbjct: 311 FSTQFPKQQPTLMLQSCQHLN-QSSVPVKSNLLTEYPWSPRWEVGRMA 357


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,664,548
Number of Sequences: 28952
Number of extensions: 352155
Number of successful extensions: 955
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)