Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0564
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    44   7e-06
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    43   2e-05
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    36   0.003
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    28   0.69 
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    26   2.8  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    25   3.7  
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo...    25   4.8  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   6.4  

>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 44.4 bits (100), Expect = 7e-06
 Identities = 21/56 (37%), Positives = 36/56 (64%)
 Frame = +1

Query: 256 PELADLIAIRLCVRKGGCSVYHKTNIETIVEIAESIRGKNIYIIQTGTNDVFFNIM 423
           PELA+ +A R+ +  G  +V   +N ET V I ES+R ++++I+QTG   +  ++M
Sbjct: 15  PELAEKVARRIGLSLGKVAVVQYSNRETSVTIGESVRDEDVFILQTGCGSINDHLM 70


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 23/56 (41%), Positives = 36/56 (64%)
 Frame = +1

Query: 256 PELADLIAIRLCVRKGGCSVYHKTNIETIVEIAESIRGKNIYIIQTGTNDVFFNIM 423
           PEL  LI+ RL +     S+    N ET VEI ES+R K+++I+Q+G++ V  ++M
Sbjct: 13  PELLHLISNRLGITPCDVSLKRFANGETSVEIRESVRDKDVFILQSGSSTVNDSLM 68


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +1

Query: 256 PELADLIAIRLCVRKGGCSVYHKTNIETIVEIAESIRGKNIYIIQTGTNDVFFNIM 423
           P+L + I   LC+  G   +   +N ET V I +S+RG ++YI+   +  V  ++M
Sbjct: 13  PKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPASGQVNDHLM 68


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 258 RSEFPLKIPMSDVEFPSILQF*DLFDKPTNLKPTIS 151
           +SE  LK+   DVEFP   +      KPT+L P  S
Sbjct: 202 KSEQKLKVDFVDVEFPEPAEGLPGTPKPTSLHPVFS 237


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +1

Query: 247 KLTPE--LADLIAIRLCVRKGGCSVYHKTNIETIVEIAESIRGKNIYI 384
           KLTPE  L D+      +    C V   T I+    I +SI GKN  I
Sbjct: 348 KLTPEQRLVDVTVSERALVGADCMVNEGTTIKDNSNIKKSIIGKNCVI 395


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 100 LNKLFSTFTNIIIKKPSGY 156
           L  L+S FT++ IK P G+
Sbjct: 24  LKSLYSDFTSLFIKNPEGF 42


>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 200 NFEIYSINPPT*SQLYPEGFLMIIFVNV 117
           N  +  +  PT  +LYPEG   I FV+V
Sbjct: 84  NLGVDLVYAPTVEELYPEGSQDITFVDV 111


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 64  SEKTRENTSFTSNSHISP 11
           S K RE T   SN H+SP
Sbjct: 237 SYKQREKTRLESNGHVSP 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,846,206
Number of Sequences: 5004
Number of extensions: 37216
Number of successful extensions: 75
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)