Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0564
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0164 - 22847641-22847834,22848033-22848288,22848634-22849266     29   2.0  
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070...    28   2.7  
12_01_0622 + 5124213-5125292,5126820-5128685                           27   8.2  
01_05_0359 + 21350580-21350829,21350990-21351064,21351156-213512...    27   8.2  

>05_05_0164 - 22847641-22847834,22848033-22848288,22848634-22849266
          Length = 360

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 352 AESIRGKNIYIIQTGTNDV 408
           ++ I GK++Y+I  GTNDV
Sbjct: 161 SDEIAGKSLYVISAGTNDV 179


>06_03_0763 -
           24405525-24405701,24406209-24406368,24406924-24407005,
           24407098-24407167,24407443-24407607,24407731-24407874,
           24408467-24408715,24409006-24409221,24409306-24409398
          Length = 451

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +1

Query: 262 LADLIAIRLCVRKGGCSVYHKTNIETIVEIAESIRGKNIYIIQTGTNDVFFNIM 423
           LA  IA  L V  G   +    + E  V++ ES+RG +++++Q   + V  N+M
Sbjct: 101 LAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNENLM 154


>12_01_0622 + 5124213-5125292,5126820-5128685
          Length = 981

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 52  WFFQIKYLTA*TFNCLLNKLFSTFTNIIIKKPSGYSWLQVG 174
           W  Q++ L     +CLL+  F+ +   I   P+G SWL+ G
Sbjct: 78  WVKQVRDLAYDIEDCLLD--FALYAARISSSPTGSSWLRPG 116


>01_05_0359 +
           21350580-21350829,21350990-21351064,21351156-21351236,
           21352633-21352830,21352930-21353019,21353096-21353253,
           21353350-21353472,21354989-21355096,21355530-21355826
          Length = 459

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 225 DVEFPSILQF*DLFDKPTNLKPTISRRFFNDNICE 121
           DVE  S++   D+ D    LK T+ R   ND  C+
Sbjct: 44  DVELISLITITDILDNEGILKKTMKRGVGNDKPCD 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,934,914
Number of Sequences: 37544
Number of extensions: 210520
Number of successful extensions: 402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)