Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0564
         (424 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)          37   0.006
SB_48280| Best HMM Match : DUF1054 (HMM E-Value=2.1)                   29   1.6  
SB_50445| Best HMM Match : PT (HMM E-Value=2)                          29   2.1  
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)                27   4.8  
SB_6299| Best HMM Match : RVT_1 (HMM E-Value=6.1e-33)                  27   6.4  
SB_13112| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65)               27   8.5  

>SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)
          Length = 227

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 15/27 (55%), Positives = 23/27 (85%)
 Frame = +1

Query: 343 VEIAESIRGKNIYIIQTGTNDVFFNIM 423
           VEIAES+RG+++YIIQ+G  ++  N+M
Sbjct: 2   VEIAESVRGEDVYIIQSGCGEINDNMM 28


>SB_48280| Best HMM Match : DUF1054 (HMM E-Value=2.1)
          Length = 406

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 286 LCVRKGGCSVYHKTNIETIVEIAESIRGKNIYIIQTGTNDVFF 414
           + V+  G SVY  T  +  V I   +     Y   TGTN+ +F
Sbjct: 342 ISVKVNGISVYDNTQADHTVNIKNLLEYDTSYAQTTGTNEFYF 384


>SB_50445| Best HMM Match : PT (HMM E-Value=2)
          Length = 206

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 277 QSNQLIQE*VSTQNTNVRRRVPVH 206
           Q  Q+ Q+  ST NTNV  RVP H
Sbjct: 45  QPTQMYQQGTSTPNTNVPTRVPKH 68


>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
          Length = 794

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 36  NEVFSLVFSDQVPNCVDV*LSSK*IIFDIHKYYH*KTFW 152
           +  FS+ F  +VP  V++ L +   + ++H  Y   +FW
Sbjct: 396 DNAFSVSFEQKVPAAVEIFLKAVWFVTNVHVLYAFASFW 434


>SB_6299| Best HMM Match : RVT_1 (HMM E-Value=6.1e-33)
          Length = 283

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 69  LDLKKPEKILHSHQTHIFHRI 7
           L +KK EKI+H++  HIF  +
Sbjct: 258 LPIKKVEKIVHAYAPHIFREL 278


>SB_13112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 305 VVQYTTRLT*RPLWKLLSQFVARIFISYRLELMMCFST 418
           V +Y TR   R L + ++++V R  I Y    M C+ T
Sbjct: 145 VTRYVTRYVTRYLTRYVTRYVTRYVIRYVTGYMTCYVT 182


>SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65)
          Length = 861

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 310 NNLLYAHIGGWQSNQLIQE*VSTQNTNVRRRVPVHI 203
           N+ +  H G WQ+N    E    ++  V R +P+H+
Sbjct: 71  NDDITKHQGKWQTNYFSLEGRQQKSRQVSRNLPIHL 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,924,594
Number of Sequences: 59808
Number of extensions: 246301
Number of successful extensions: 482
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)