Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0564
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   1.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   4.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   10.0 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   10.0 

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 238 FEWKLTPELADLIAIRLC 291
           FE K  P   DL A+RLC
Sbjct: 172 FEHKRQPTSIDLNAVRLC 189


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 238 FEWKLTPELADLIAIRLC 291
           FE K  P   DL A+RLC
Sbjct: 172 FEHKRQPTSIDLNAVRLC 189


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 16  KYVSLM*MKYFLWFFQIKYL 75
           KYV+++  + FLW F +  L
Sbjct: 512 KYVAMVLDRLFLWIFTLAVL 531


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 16  KYVSLM*MKYFLWFFQIKYL 75
           KYV+++  + FLW F +  L
Sbjct: 512 KYVAMVLDRLFLWIFTLAVL 531


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 16  KYVSLM*MKYFLWFFQI 66
           KYV+++  + FLW F +
Sbjct: 540 KYVAMVLDRIFLWIFTV 556


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 16  KYVSLM*MKYFLWFFQI 66
           KYV+++  + FLW F +
Sbjct: 507 KYVAMVLDRLFLWIFTL 523


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
          protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 59 KNQRKYFIHIKLTYF 15
          +NQ++++ HI L YF
Sbjct: 2  ENQKEHYRHILLFYF 16


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 372 LATN*LSNFHNGLYVSL 322
           L  N +SNF+NG + +L
Sbjct: 461 LGENRISNFYNGSFRNL 477


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -3

Query: 326 VLWYTEQPPLRTHRRMAIKSANSGVSFHSKYQCP 225
           V+ Y E+P      +  IKS   G    +   CP
Sbjct: 831 VMSYGERPYWNWSNQDVIKSIEKGYRLPAPMDCP 864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,880
Number of Sequences: 438
Number of extensions: 2453
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)