Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0562
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 51 1e-07
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 38 0.002
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 32 0.073
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 2.7
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo... 27 3.6
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 26 4.8
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 4.8
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz... 26 4.8
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 26 6.3
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 6.3
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 6.3
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 6.3
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 6.3
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 8.4
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 51.2 bits (117), Expect = 1e-07
Identities = 23/72 (31%), Positives = 43/72 (59%)
Frame = +3
Query: 513 IVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVF 692
I+ E++EK S+I++N+ + I++ GN+ G +RK H+ F+ + + + P+F
Sbjct: 84 IIYGFPEKEEKQSNIIYNSCIYITENGNLGGVYRKVHL-----FDTERKHFKKGSDFPIF 138
Query: 693 ATRYGKIAVNIC 728
T +GK+ V IC
Sbjct: 139 ETSFGKLGVMIC 150
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 37.5 bits (83), Expect = 0.002
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = +3
Query: 540 EKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATRY 704
E+ L+NTA+V +G +I HRK H IP F ES+ G+ + T Y
Sbjct: 129 ERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDIDIPGGVSFRESDSLSPGD-AMTMVDTEY 187
Query: 705 GKIAVNIC 728
GK + IC
Sbjct: 188 GKFGLGIC 195
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 32.3 bits (70), Expect = 0.073
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = -3
Query: 479 KVVVGPSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCS 300
++ V S ++A SH CF QN+ + + + +P T F+ LLK AFF
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289
Query: 299 LTGR 288
L GR
Sbjct: 290 LFGR 293
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +3
Query: 510 VIVSSILERDEKHSDIL 560
++VS++LE DEKH D++
Sbjct: 999 IVVSNLLEMDEKHVDVV 1015
>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 185
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +3
Query: 489 TRHQVRKVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 668
T+H V ++ S E+ EK+ ++W+ + + + K ++I + FNE + E
Sbjct: 87 TKHVVVYLVASYSTEKHEKNQVVVWDKILSSPEESKMFMKDTLSNI-QAHPFNEYSNQFE 145
Query: 669 G 671
G
Sbjct: 146 G 146
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 4.8
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -1
Query: 694 ANTGWPVLPSM**LDSLKSPTLGMWFLR-CFPITFPVSLITTAVFQSMSECFSSLSN 527
A+ G P++ + LD+ G W + + PVSLIT AVF + C SSL +
Sbjct: 247 ADDGKPLVEKI--LDAAGQKGTGKWTAQNALEMGTPVSLITEAVF---ARCLSSLKS 298
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 730 KQMFTAILPYLVANTGWPVLPS 665
K +FTA+ P+L A T + ++PS
Sbjct: 1529 KPVFTAVPPFLFAGTDFALIPS 1550
>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 719 HRDLAVSGRKYRMAGVTFHVVVGFVKIAD 633
HR+L V K A V H VVG K D
Sbjct: 202 HRELTVRAAKQHGARVLIHPVVGMTKPGD 230
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/60 (23%), Positives = 26/60 (43%)
Frame = +3
Query: 498 QVRKVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNT 677
+V + SS++ER + H +W+ AV G +H ++ S ++ G T
Sbjct: 460 EVYDIASSSLIERIQAHDGAIWDLAV--GHDGTYFATASADHTVKLWSLKSSFDFVPGTT 517
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 552 PNASRPFLISRTRSPCVLDGEFPKEGRGRP 463
P ++P ++ T + +D PK GRGRP
Sbjct: 316 PPLNKPKILFGTSTENKIDENRPKRGRGRP 345
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 71 NNLTGRDLEEFNRIHFGRRNNLEI 142
NN+ R +EE N I G+R LE+
Sbjct: 8 NNILKRHIEEDNNIDNGKRKKLEL 31
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 345 IDDFLDFIENCFLLLVDWTIGGHRDGMLNYSTFTILGGRVCSS 217
I DF D IE+ + W++G G++ + FT+L +C +
Sbjct: 472 ISDFWDDIESDMYGFLTWSMGSQIPGII--TAFTLLLASLCKN 512
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 41 ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 151
E H +E +I + N+T DL F + FG+ N ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -2
Query: 723 CSPRSCRIWSQIQDGRCYLPCSSWI 649
C SC++ Q +DG C++ +I
Sbjct: 438 CHSDSCKVSCQNEDGTCFISAKDYI 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,145
Number of Sequences: 5004
Number of extensions: 64187
Number of successful extensions: 222
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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