Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0562
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 131 6e-31
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 50 1e-06
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 37 0.014
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 34 0.10
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966... 32 0.54
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 32 0.54
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 30 2.2
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 29 2.9
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 2.9
04_01_0376 - 4929447-4929731 29 5.0
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 28 6.6
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 131 bits (316), Expect = 6e-31
Identities = 58/73 (79%), Positives = 62/73 (84%)
Frame = +3
Query: 510 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPV 689
VIVS ILERD H +I+WNTAVVI + GN+IG HRKNHIPRVGDFNES YYMEGNTGHPV
Sbjct: 188 VIVSPILERDVNHGEIVWNTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNTGHPV 247
Query: 690 FATRYGKIAVNIC 728
F T YGKI VNIC
Sbjct: 248 FETAYGKIGVNIC 260
Score = 101 bits (242), Expect = 6e-22
Identities = 51/88 (57%), Positives = 62/88 (70%), Gaps = 5/88 (5%)
Frame = +1
Query: 256 IVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ-----ELWNMPFAFCTR 420
++Q+SIA+PT +QKKAI KVK +ID AG GVNI+C Q E W MPFAFCTR
Sbjct: 100 LIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLSEAWTMPFAFCTR 159
Query: 421 EKQPWCEFAESAEDGPTTTFLRELAIKY 504
EK+ WCEFAE DG +T FL++LA KY
Sbjct: 160 EKR-WCEFAEPV-DGESTQFLQQLAKKY 185
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +3
Query: 540 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAV 719
E+ ++ +N+ +I G +G +RK+HIP + E Y+ G+TG F T+Y I V
Sbjct: 98 EEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKAFKTKYATIGV 157
Query: 720 NIC 728
IC
Sbjct: 158 GIC 160
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 331 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELA 495
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLA 85
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 37.1 bits (82), Expect = 0.014
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +3
Query: 540 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRV---GD--FNESNYYMEGNTGHPVFATRY 704
E+ S L+NT VI G + KHRK H+ + GD F ES+ + G + T
Sbjct: 67 ERSSGRLFNTCCVIGPDGQIKAKHRKLHLFEIDIPGDITFRESDTFTAGQE-PTIVDTDV 125
Query: 705 GKIAVNIC 728
G+I + IC
Sbjct: 126 GRIGIGIC 133
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 34.3 bits (75), Expect = 0.10
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +3
Query: 540 EKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATRY 704
E+ + L+NT V G + GKHRK H IP F ES G V T
Sbjct: 134 ERSGNKLYNTCCVFGSDGELKGKHRKIHLFDIDIPGKITFKESKTLTAGQ-DLTVVDTDV 192
Query: 705 GKIAVNIC 728
G+I + IC
Sbjct: 193 GRIGIGIC 200
>05_06_0166 +
26093618-26095381,26095820-26096039,26096345-26096674,
26097481-26098029,26098366-26098426,26099737-26099824,
26100240-26100299
Length = 1023
Score = 31.9 bits (69), Expect = 0.54
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -2
Query: 393 PQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDWTIGGHRDGMLNYSTFTILGGRVCSSL 214
P+L E D VNTL + + LD + L+ + G RD + ++LG R+ SL
Sbjct: 525 PKLKECDIVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSL 584
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 31.9 bits (69), Expect = 0.54
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -2
Query: 393 PQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDWTIGGHRDGMLNYSTFTILGGRVCSSL 214
P+L E D VNTL + + LD + L+ + G RD + ++LG R+ SL
Sbjct: 521 PKLKECDIVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSL 580
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +3
Query: 558 LWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNIC 728
L+NT + G +GKHRK + G + +G+T PV+ T GKI IC
Sbjct: 139 LYNTVLFFDPLGKYLGKHRK--VMPTGLERVFWGFGDGST-IPVYDTPIGKIGAVIC 192
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +3
Query: 537 DEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATR 701
D+ H +NT V+I D+G + +RK H +P + ES + G+T V +
Sbjct: 171 DDSHQ---YNTHVLIDDSGEIRSSYRKIHLFDVDVPGNMVYKESRFTTAGDTVVAV-DSP 226
Query: 702 YGKIAVNIC 728
+G++ + +C
Sbjct: 227 FGRLGLTVC 235
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 464 PSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSW 354
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>04_01_0376 - 4929447-4929731
Length = 94
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 714 RSCRIWSQIQDGRCYLPCSSW 652
RSC W +Q GRC CS+W
Sbjct: 63 RSCAAW--LQQGRCSAGCSAW 81
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 437 HHGCFSLVQNAKGMFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 306
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,010,709
Number of Sequences: 37544
Number of extensions: 458518
Number of successful extensions: 1376
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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