Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0562
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)                 38   0.006
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)          38   0.011
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             30   2.2  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_43069| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10)                     29   2.9  
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_8320| Best HMM Match : p450 (HMM E-Value=0)                         29   5.1  
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)                  28   6.7  
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_43440| Best HMM Match : PADR1 (HMM E-Value=0.45)                    28   8.9  
SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)                28   8.9  

>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
          Length = 242

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +3

Query: 510 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGN 674
           ++  SI ER       L+NT++    +GN++GKHRK H     +P    F ES     G 
Sbjct: 82  IVGGSIPERASNRK--LYNTSLSYDPSGNLMGKHRKIHLFDIDVPGKIRFQESEVLSPGE 139

Query: 675 TGHPVFATRYGKIAVNIC 728
               +  T Y KI + IC
Sbjct: 140 -NLTILDTEYCKIGIGIC 156


>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
          Length = 128

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +3

Query: 510 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGN 674
           ++  SI ER       L+NT++    +GN++GKHRK H     +P    F ES     G 
Sbjct: 38  IVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRKIHLFDIDVPGKIRFQESEVLSPGE 95

Query: 675 TGHPVFATRYGKIAVNIC 728
               +  T Y KI + IC
Sbjct: 96  -NLTILDTEYCKIGIGIC 112


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 44/183 (24%), Positives = 65/183 (35%), Gaps = 16/183 (8%)
 Frame = -2

Query: 723  CSPRSCRIWSQIQDGR----CYLPCS-SWIR*NRRLSECGSCDVSRSRFRCH*LQPQCSK 559
            C+ + C      QDGR    C  P     +R   + +EC S         CH L  +   
Sbjct: 783  CASQPCLNNGTCQDGRGNFSCVCPAGFEGLRCENQTNECASSPCFNGG-TCHDLLNRFEC 841

Query: 558  VCPNASRPFLISRTRSPCVLDGEFPKEGRGRPVFS*FGKLAPRLLLP--------CAERE 403
            VCPN             C+ D   P    G  V    G +  + + P        CA   
Sbjct: 842  VCPNGFLGRQCEANVVECLSD---PCLNNGTCVEK-IGVVGYQCVCPDGFAGDFSCACPV 897

Query: 402  GHVPQLLETD--DVNTLLAGNIDDFLDFIENCFLLLVDWTIGGHRDGML-NYSTFTILGG 232
            G+  +L E D  D  ++  GN+   +D + N     V W  G + + ++ N  T     G
Sbjct: 898  GYTGKLCEIDIDDCASMPCGNLSTCIDHVNNYSCACVPWYTGRNCENLVTNCDTAPCQNG 957

Query: 231  RVC 223
              C
Sbjct: 958  ATC 960


>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 235  PENCEGRIVQHSIAVPTDR-PVNEQKKAIFNKVKKIIDVAGQEGVN 369
            P N     V   I VP  + P N+ ++A+F++V K+ ++ GQ+ V+
Sbjct: 971  PNNPSEEFVHKPILVPVMKSPRNDDERALFSRVSKVKNLWGQDLVD 1016


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 150  KNPRSLQLRRLTSTSPHTLSRPRTSRPDPREL*R*NSSAFHRGAHRSSSQRAKE 311
            K PR     R  S+SP   SRP+ + P PR        +  RG+ RS S   +E
Sbjct: 1047 KRPRHQSRERRPSSSPPRRSRPQRTSPSPRRTPEDRRRS--RGSRRSPSPPKRE 1098


>SB_43069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = -2

Query: 726 RCSPRSCRIWSQIQDGRCYLPCSSW-----IR*NRRLSEC-GSCDVSRSRFR 589
           RC+P++C++   +   RC L C  +      R   R  +C G CD++  + R
Sbjct: 31  RCNPQNCQVGQWVPWSRCNLACGDYGTQRRTRSKTRSEKCGGKCDLALIQVR 82


>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 153 NPRSLQLRRLTSTSPHTLSRPRTSRPDP 236
           +PR + L+   S+SPHT  R R+S  DP
Sbjct: 687 SPRHVLLQEARSSSPHTSIRNRSSSSDP 714


>SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
 Frame = +3

Query: 564 NTAVVISDTGNVIGK---HRKNHIPRVGDFNE----SNYYMEGN-TGHPVFATRYGKI 713
           NTA +IS+TG+VI K   H K + P   D +       Y   GN TG PV+A  YG++
Sbjct: 52  NTAKIISNTGDVIYKTRTHEKVYEPSEKDPSAIPPFLAYSPSGNVTGDPVYA-NYGRV 108


>SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10)
          Length = 326

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
 Frame = +3

Query: 564 NTAVVISDTGNVIGK---HRKNHIPRVGDFNE----SNYYMEGN-TGHPVFATRYGKI 713
           NTA +IS+TG+VI K   H K + P   D +       Y   GN TG PV+A  YG++
Sbjct: 143 NTAKIISNTGDVIYKTRTHEKVYEPSEKDPSAIPPFLAYSPSGNVTGDPVYA-NYGRV 199


>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 402 GHVPQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDW 292
           G VP   +   +NTLL GN  D   F  NC  LL  W
Sbjct: 723 GLVPYWTKLFGINTLLVGNARDSHLFCRNCSGLLPYW 759


>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1207

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 549 NASRPFLISRTRSPCVLDGEFPKEGRGRPVFS*FGKLAPRLLLPC 415
           N+++ F  +  RS    DGE  K GR    FS   KLA  +L  C
Sbjct: 382 NSAKSFTRNGARSIVRADGEERKFGRSEEEFSDLDKLAINILYDC 426


>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 700

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 540 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 668
           +K  D LW  A  + D      KH++N I R  +F E ++Y E
Sbjct: 391 QKRFDTLWVKAKSMMDEET---KHKENAIKRSKEFEERSHYFE 430


>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 510 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRK 617
           ++  SI ER       L+NT++    +GN++GKHRK
Sbjct: 84  IVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRK 117


>SB_43440| Best HMM Match : PADR1 (HMM E-Value=0.45)
          Length = 942

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -3

Query: 515  DHLAYLMASSRRKVVVGPSSA---DSANSHHGCFSLVQNAKGMFHNSW 381
            DH+  ++A +++K  V  +         SHH CFS+ +   G  H  W
Sbjct: 890  DHVLGMIADAKKKCTVCGTQLLFQGYTKSHHHCFSIDRLDDGQGHYKW 937


>SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1101

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 446 PNQLKTGRPRPSFGNSPSSTQGDRVLDIRKGREAFGHTLEHCGC 577
           P++ K  RP    G+SP+  +   V +  KGRE   H +E   C
Sbjct: 107 PSKHKKLRPIEQNGSSPARHRPANVWNYPKGREKLKHLVEQPPC 150


>SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)
          Length = 784

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 573 VVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNI 725
           + +S T  + G+H    + R    +ES Y++    GH  FAT+   + + I
Sbjct: 490 LTVSYTPRIHGEHEITILARGQHVDESPYHVHVKKGHMNFATKNTPVCLRI 540


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,874,666
Number of Sequences: 59808
Number of extensions: 517780
Number of successful extensions: 1523
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)