Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0562
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.9  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.9  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   2.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   6.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   9.0  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 474 DLPSGTRHQVRKVIVSSILERDEKHSDILWNTAVVISD 587
           +L SG+    R    S  +  DE  SD+L+N  VV  D
Sbjct: 547 NLKSGSNTIERNSHESVFVVPDEVPSDVLYNRLVVSED 584


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 244 CEGRIVQHSIAVPTDRPVNEQKKAIFNKV 330
           C G  ++   A  TD  V  Q KAI NK+
Sbjct: 125 CIGEKLEEREAGKTDEVVFRQTKAIANKI 153


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 474 DLPSGTRHQVRKVIVSSILERDEKHSDILWNTAVVISD 587
           +L SG+    R    S  +  DE  SD+L+N  VV  D
Sbjct: 547 NLKSGSNTIERNSHESVFVVPDEVPSDVLYNRLVVSED 584


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 381 PRVVEHALRVLHKGEAAVVRVCRIS*RRADHDLPSGTRHQVRKVIVSSILE 533
           P+ +++ +R   KG+  +  +   S ++  H LP+G     RKV+V ++ E
Sbjct: 37  PKGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPTG----FRKVLVHNVKE 83


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 132 LFRRPK*ILLNSSKSRPVKL 73
           LFR PK I +N+++ + +KL
Sbjct: 119 LFRGPKGIQINATELQKIKL 138


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 297 DWTIGGHRDGML 262
           +W +G H DG L
Sbjct: 518 EWKVGNHEDGYL 529


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 297 DWTIGGHRDGML 262
           +W +G H DG L
Sbjct: 433 EWKVGNHEDGYL 444


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 297 DWTIGGHRDGML 262
           +W +G H DG L
Sbjct: 752 EWKVGNHEDGYL 763


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 485 RRKVVVGPSSADSANSHHGCFSLVQNAKG 399
           RR      ++     S H CF  V+N KG
Sbjct: 542 RRNAATWKNAVRHNLSLHKCFMRVENVKG 570


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 579 LQPQCSKVCPNASRPFLISRTRSPCV 502
           +Q  C+K    ++  F  S+T +PC+
Sbjct: 83  MQCSCNKCIGCSAEKFECSKTSNPCL 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,907
Number of Sequences: 438
Number of extensions: 4723
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)