Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0561
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    26   4.6  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   6.0  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    25   8.0  

>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 257 YLVEYQHLLERQDIKVRHVLALYLRSYELTNTVPFNVDALTNGQPIEQHP 406
           Y+V+    ++ ++IK    +AL   SY+L   +P  VD L +   +E+ P
Sbjct: 91  YVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIP 140


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 541 RTETSKRSSGHNPFHERRRALTAS 612
           R E  +RS GHN + E    LTAS
Sbjct: 624 RCEKKRRSVGHNSYKEHLVLLTAS 647


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +2

Query: 290 QDIKVRHVLALYLRSYELTNTVPFNVDALTNGQPIEQHPTEKDVEG 427
           +D KVR     YLR Y    T  F  DAL   Q ++Q   EK +EG
Sbjct: 49  EDSKVRE----YLRRYGEPITY-FGEDALARRQRLQQLMIEKSLEG 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,492
Number of Sequences: 5004
Number of extensions: 58492
Number of successful extensions: 171
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)