Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0561
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0124 - 31830797-31831371,31831510-31831532,31832143-318322...    29   2.7  
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580...    29   2.7  
12_01_0984 - 9985300-9985804,9985894-9986933                           29   4.8  
01_05_0797 + 25313226-25313330,25313464-25313545,25317573-253176...    28   8.3  

>03_06_0124 -
           31830797-31831371,31831510-31831532,31832143-31832271,
           31833287-31834842
          Length = 760

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 514 RVKYLSNTCRTETSKRSSGHNPFHERRRALTASTPLRGRS-HEAPKKTYGTKSTQTE 681
           R +  SN+  T TS RSS H  FH   R  +   P  G+S  +   K+ G+   + E
Sbjct: 677 REELQSNSSLTSTSSRSSWHFAFHGDSRRSSELRPTLGQSARKQSVKSQGSDEDEDE 733


>03_05_0725 +
           27155736-27155746,27155798-27155949,27156108-27158068,
           27159169-27159397,27159506-27159634,27159725-27159838,
           27160059-27160258,27160301-27160599,27160713-27160923,
           27161017-27161172,27161290-27161447,27161532-27161724,
           27162015-27162406,27162537-27162717,27162802-27163031,
           27163108-27163753,27163833-27163902,27163994-27164244
          Length = 1860

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 493 DHSIWHPRVKYLSNTCRTETSKRSSGHNPFHERRRALTASTPLRGR 630
           +H ++H     LS+ CRT   ++ +  +  H   R  T    LR R
Sbjct: 219 EHDLYHDGESVLSHDCRTAVKEKDTNSDREHPHERRSTRLERLRSR 264


>12_01_0984 - 9985300-9985804,9985894-9986933
          Length = 514

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 363 LKGTVFVSSYERKYNAKTCLTFISCLSRRCWYS 265
           +K  + +S Y+  Y+ KTCL ++S      W S
Sbjct: 1   MKDILLLSYYDLPYHLKTCLLYLSIFPEDYWIS 33


>01_05_0797 +
           25313226-25313330,25313464-25313545,25317573-25317660,
           25318298-25318331,25318399-25319243,25319278-25319371,
           25319432-25319611
          Length = 475

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +2

Query: 155 ISQNGNQSGKR--NISKIKKRNSETCFSYKDIREQIYLVEYQHLLERQDIKVRHVLALYL 328
           +   GN   +R   + ++++ +SET FS+KD  +   LV  Q  L ++  K +++   Y+
Sbjct: 43  VKPRGNDIHRRWLRVRRVEE-DSETDFSFKDANKLCSLVRKQKALAKK--KRKYLAESYV 99

Query: 329 RSYELT 346
           RS E++
Sbjct: 100 RSDEVS 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,379,552
Number of Sequences: 37544
Number of extensions: 354130
Number of successful extensions: 1000
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)