Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0561
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)                    29   2.8  
SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)                   29   4.9  
SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)                  29   4.9  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_28604| Best HMM Match : FerB (HMM E-Value=5.19994e-41)              28   6.4  
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)                 28   6.4  
SB_22125| Best HMM Match : TPR_1 (HMM E-Value=7.7e-13)                 28   8.5  

>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
          Length = 763

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 508 HPRVKYLSNTCRT--ETSKRSSGHNPFHERRRALTASTPLRGRSHEAPKKTYGTKST 672
           H R  +L   C++  +TS+ S    P   ++R   AS PL+  + E  +KT   K T
Sbjct: 588 HSRTCFLGTICKSISKTSEMSIKLGPSCSQKRGPRASGPLKSTTTEGARKTGTAKIT 644


>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
          Length = 1333

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 185 RNISKIKKRNSETCFSYKDIREQIYLVEYQHLLERQ 292
           RN+S+I K ++E    + D+ E + LVEY   L  +
Sbjct: 322 RNVSEISKGDAEILNEFNDVFEGLGLVEYHITLSNE 357


>SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)
          Length = 878

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 185 RNISKIKKRNSETCFSYKDIREQIYLVEYQHLLERQ 292
           RN+S+I K ++E    + D+ E + LVEY   L  +
Sbjct: 214 RNVSEISKGDAEILNEFNDVFEGLGLVEYHITLSNE 249


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 107  KLRLSSVL-RGQC*EIIISQNGNQSGKRNISKIKKRNSETCFSYKDIREQIYLVEYQHLL 283
            KLR S V  R    E + + N N  G  ++ + K+   E C    D+RE++ + E +  L
Sbjct: 3180 KLRSSEVSERDSSIEELRTNNENLRG--DLKRTKESFREACIENSDLREKLSVTEEK--L 3235

Query: 284  ERQDIKVRHV 313
            ER D K++ +
Sbjct: 3236 ERVDAKLQEL 3245


>SB_28604| Best HMM Match : FerB (HMM E-Value=5.19994e-41)
          Length = 687

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 463 SFTVACTIVFAGAFYVFFSW 404
           S T AC  VF G+FY F  W
Sbjct: 387 SSTAACNPVFDGSFYYFLPW 406


>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
          Length = 242

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 389 PIEQHPTEK-DVEGPSENNSTSDSEAE 466
           PIE+  T+  D EGP EN  TS  EAE
Sbjct: 73  PIEKAETQPVDTEGPVENAETSFEEAE 99


>SB_22125| Best HMM Match : TPR_1 (HMM E-Value=7.7e-13)
          Length = 452

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +1

Query: 7   SGENRLLKSLCAFINLKFALCLNDYGYCSSGLRKTT---LIQRIAWSMLRNYHITERKSV 177
           S E   L+ +  ++N K AL LND+  C S   + T    ++ + ++ L N++ T + S 
Sbjct: 231 SAETFHLRGMLQYMNGKPALALNDFKACQSFDPQNTACLYMKAVCYATLGNFYETVKMST 290

Query: 178 R 180
           +
Sbjct: 291 K 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,722,372
Number of Sequences: 59808
Number of extensions: 425770
Number of successful extensions: 1236
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)