Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0561
(706 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M34079-1|AAA36666.1| 404|Homo sapiens protein ( Human immunodef... 32 1.7
CR456731-1|CAG33012.1| 404|Homo sapiens PSMC3 protein. 32 1.7
BC107804-1|AAI07805.1| 491|Homo sapiens PSMC3 protein protein. 32 1.7
BC106920-1|AAI06921.1| 439|Homo sapiens proteasome (prosome, ma... 32 1.7
BC073165-1|AAH73165.3| 439|Homo sapiens proteasome (prosome, ma... 32 1.7
BC008713-1|AAH08713.4| 439|Homo sapiens proteasome (prosome, ma... 32 1.7
AK222485-1|BAD96205.1| 424|Homo sapiens proteasome 26S ATPase s... 32 1.7
Z85986-2|CAI19118.1| 348|Homo sapiens potassium channel tetrame... 30 9.3
BC023525-1|AAH23525.1| 253|Homo sapiens KCTD20 protein protein. 30 9.3
AY305862-1|AAP74385.1| 419|Homo sapiens K+ channel tetramerizat... 30 9.3
AL136135-1|CAH72192.1| 348|Homo sapiens potassium channel tetra... 30 9.3
>M34079-1|AAA36666.1| 404|Homo sapiens protein ( Human
immunodeficiency virus tat transactivator binding
protein-1 (tbp-1) mRNA, complete cds. ).
Length = 404
Score = 32.3 bits (70), Expect = 1.7
Identities = 18/87 (20%), Positives = 37/87 (42%)
Frame = +2
Query: 155 ISQNGNQSGKRNISKIKKRNSETCFSYKDIREQIYLVEYQHLLERQDIKVRHVLALYLRS 334
+ N + NI +R + C K Q Y + L++ + +K ++ + S
Sbjct: 64 VDPNDQEEDGANIDLDSQRKGK-CAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDS 122
Query: 335 YELTNTVPFNVDALTNGQPIEQHPTEK 415
Y + T+P D+ +++ PTE+
Sbjct: 123 YLILETLPTEYDSRVKAMEVDERPTEQ 149
>CR456731-1|CAG33012.1| 404|Homo sapiens PSMC3 protein.
Length = 404
Score = 32.3 bits (70), Expect = 1.7
Identities = 18/87 (20%), Positives = 37/87 (42%)
Frame = +2
Query: 155 ISQNGNQSGKRNISKIKKRNSETCFSYKDIREQIYLVEYQHLLERQDIKVRHVLALYLRS 334
+ N + NI +R + C K Q Y + L++ + +K ++ + S
Sbjct: 64 VDPNDQEEDGANIDLDSQRKGK-CAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDS 122
Query: 335 YELTNTVPFNVDALTNGQPIEQHPTEK 415
Y + T+P D+ +++ PTE+
Sbjct: 123 YLILETLPTEYDSRVKAMEVDERPTEQ 149
>BC107804-1|AAI07805.1| 491|Homo sapiens PSMC3 protein protein.
Length = 491
Score = 32.3 bits (70), Expect = 1.7
Identities = 18/87 (20%), Positives = 37/87 (42%)
Frame = +2
Query: 155 ISQNGNQSGKRNISKIKKRNSETCFSYKDIREQIYLVEYQHLLERQDIKVRHVLALYLRS 334
+ N + NI +R + C K Q Y + L++ + +K ++ + S
Sbjct: 151 VDPNDQEEDGANIDLDSQRKGK-CAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDS 209
Query: 335 YELTNTVPFNVDALTNGQPIEQHPTEK 415
Y + T+P D+ +++ PTE+
Sbjct: 210 YLILETLPTEYDSRVKAMEVDERPTEQ 236
>BC106920-1|AAI06921.1| 439|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 3 protein.
Length = 439
Score = 32.3 bits (70), Expect = 1.7
Identities = 18/87 (20%), Positives = 37/87 (42%)
Frame = +2
Query: 155 ISQNGNQSGKRNISKIKKRNSETCFSYKDIREQIYLVEYQHLLERQDIKVRHVLALYLRS 334
+ N + NI +R + C K Q Y + L++ + +K ++ + S
Sbjct: 99 VDPNDQEEDGANIDLDSQRKGK-CAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDS 157
Query: 335 YELTNTVPFNVDALTNGQPIEQHPTEK 415
Y + T+P D+ +++ PTE+
Sbjct: 158 YLILETLPTEYDSRVKAMEVDERPTEQ 184
>BC073165-1|AAH73165.3| 439|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 3 protein.
Length = 439
Score = 32.3 bits (70), Expect = 1.7
Identities = 18/87 (20%), Positives = 37/87 (42%)
Frame = +2
Query: 155 ISQNGNQSGKRNISKIKKRNSETCFSYKDIREQIYLVEYQHLLERQDIKVRHVLALYLRS 334
+ N + NI +R + C K Q Y + L++ + +K ++ + S
Sbjct: 99 VDPNDQEEDGANIDLDSQRKGK-CAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDS 157
Query: 335 YELTNTVPFNVDALTNGQPIEQHPTEK 415
Y + T+P D+ +++ PTE+
Sbjct: 158 YLILETLPTEYDSRVKAMEVDERPTEQ 184
>BC008713-1|AAH08713.4| 439|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 3 protein.
Length = 439
Score = 32.3 bits (70), Expect = 1.7
Identities = 18/87 (20%), Positives = 37/87 (42%)
Frame = +2
Query: 155 ISQNGNQSGKRNISKIKKRNSETCFSYKDIREQIYLVEYQHLLERQDIKVRHVLALYLRS 334
+ N + NI +R + C K Q Y + L++ + +K ++ + S
Sbjct: 99 VDPNDQEEDGANIDLDSQRKGK-CAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDS 157
Query: 335 YELTNTVPFNVDALTNGQPIEQHPTEK 415
Y + T+P D+ +++ PTE+
Sbjct: 158 YLILETLPTEYDSRVKAMEVDERPTEQ 184
>AK222485-1|BAD96205.1| 424|Homo sapiens proteasome 26S ATPase
subunit 3 variant protein.
Length = 424
Score = 32.3 bits (70), Expect = 1.7
Identities = 18/87 (20%), Positives = 37/87 (42%)
Frame = +2
Query: 155 ISQNGNQSGKRNISKIKKRNSETCFSYKDIREQIYLVEYQHLLERQDIKVRHVLALYLRS 334
+ N + NI +R + C K Q Y + L++ + +K ++ + S
Sbjct: 84 VDPNDQEEDGANIDLDSQRKGK-CAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDS 142
Query: 335 YELTNTVPFNVDALTNGQPIEQHPTEK 415
Y + T+P D+ +++ PTE+
Sbjct: 143 YLILETLPTEYDSRVKAMEVDERPTEQ 169
>Z85986-2|CAI19118.1| 348|Homo sapiens potassium channel
tetramerisation domain containing 20 protein.
Length = 348
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 284 ERQDIKVRHVLALYLRSYELTNTVPFNVDALTNGQPIEQHPTEKD 418
E+++ K RHV +RS LTN V D L + + + HP + D
Sbjct: 285 EKEEGKSRHVDFQCVRSKSLTNLVAAGDDVLEDQEILMHHPPQVD 329
>BC023525-1|AAH23525.1| 253|Homo sapiens KCTD20 protein protein.
Length = 253
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 284 ERQDIKVRHVLALYLRSYELTNTVPFNVDALTNGQPIEQHPTEKD 418
E+++ K RHV +RS LTN V D L + + + HP + D
Sbjct: 190 EKEEGKSRHVDFQCVRSKSLTNLVAAGDDVLEDQEILMHHPPQVD 234
>AY305862-1|AAP74385.1| 419|Homo sapiens K+ channel tetramerization
protein protein.
Length = 419
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 284 ERQDIKVRHVLALYLRSYELTNTVPFNVDALTNGQPIEQHPTEKD 418
E+++ K RHV +RS LTN V D L + + + HP + D
Sbjct: 356 EKEEGKSRHVDFQCVRSKSLTNLVAAGDDVLEDQEILMHHPPQVD 400
>AL136135-1|CAH72192.1| 348|Homo sapiens potassium channel
tetramerisation domain containing 20 protein.
Length = 348
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 284 ERQDIKVRHVLALYLRSYELTNTVPFNVDALTNGQPIEQHPTEKD 418
E+++ K RHV +RS LTN V D L + + + HP + D
Sbjct: 285 EKEEGKSRHVDFQCVRSKSLTNLVAAGDDVLEDQEILMHHPPQVD 329
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,001,974
Number of Sequences: 237096
Number of extensions: 1986265
Number of successful extensions: 4754
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4749
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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