Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0561
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.7  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   6.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.5  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   8.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.6  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 577 PFHERRRALTASTPLRGRSHEAPKKTYGTKSTQTEY 684
           P H RR+ L      +G   E    T GTK    E+
Sbjct: 271 PQHARRKVLAGIVQTKGSDAELICVTTGTKCVSGEH 306


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 529 SNTCRTETSKRSSG 570
           SNTC    S+RSSG
Sbjct: 18  SNTCSNSQSQRSSG 31


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 529 SNTCRTETSKRSSG 570
           SNTC    S+RSSG
Sbjct: 18  SNTCSNSQSQRSSG 31


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +2

Query: 203 KKRNSETCFSYKDIREQIYLVEYQHLLERQDIKVRHVLALYLRSYEL 343
           +KR  +T   Y+ +  +      ++L  R+ I++ H L L  R  ++
Sbjct: 8   RKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKI 54


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +2

Query: 203 KKRNSETCFSYKDIREQIYLVEYQHLLERQDIKVRHVLALYLRSYEL 343
           +KR  +T   Y+ +  +      ++L  R+ I++ H L L  R  ++
Sbjct: 270 RKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKI 316


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 227 FSYKDIREQIYLVEYQHLLE 286
           F + D R   YLV  Q LLE
Sbjct: 121 FHHDDARPHTYLVTRQKLLE 140


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 476 LFNRSKITASGIRG*NTFR 532
           +FN +KIT +G+    T+R
Sbjct: 371 VFNDTKITITGLNAVTTYR 389


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 265 H*IDLLPDILITKARLAVPFFNLTNISFPGLIS 167
           H  D+   IL TK       F +TN S PG++S
Sbjct: 158 HGTDIEMRILKTKNECDHVQFLITNTSGPGVVS 190


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 326 LRSYELTNTVPFNVDALTN 382
           L+ YE+ + VPFN   +T+
Sbjct: 308 LKYYEVGSNVPFNFKFITD 326


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 265 H*IDLLPDILITKARLAVPFFNLTNISFPGLIS 167
           H  D+   IL TK       F +TN S PG++S
Sbjct: 158 HGTDIEMRILKTKNECDHVQFLITNTSGPGVVS 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,090
Number of Sequences: 438
Number of extensions: 3894
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)