Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0561
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma...    29   2.3  
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote...    28   5.2  
At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR...    28   5.2  
At2g35300.1 68415.m04329 late embryogenesis abundant group 1 dom...    27   9.2  
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc...    27   9.2  
At1g19220.1 68414.m02392 transcriptional factor B3 family protei...    27   9.2  

>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 433

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +2

Query: 356 PFNVDALTNGQPIEQHPTEK---DVEGPSENNSTSDSEAEMQYLFNRSKITASGIRG 517
           P   D   NG+P+ Q P EK   D+E   E++ T D E E     N   +    IRG
Sbjct: 377 PSERDEEPNGEPVYQTPNEKPREDLESHEEHDITIDIEFESD---NEQVVNVDVIRG 430


>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 751

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 293 DIKVRHVLALYLRSYELTNTVPFNVDALTNGQPIE 397
           D   RHV  L L S  LT T+P N+ +L + Q ++
Sbjct: 72  DASSRHVTVLSLPSSNLTGTLPSNLGSLNSLQRLD 106


>At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1147

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 155  ISQNGNQSGKRNISKIKKRNSETCFSYKDIREQIYLVEYQHLL 283
            +S+N   + +R   ++ +RNS + FSYKD    +Y V +  ++
Sbjct: 1100 LSENIEYTCERFWDELYERNSRSIFSYKDEDGDVYWVNWDLMM 1142


>At2g35300.1 68415.m04329 late embryogenesis abundant group 1
           domain-containing protein / LEA group 1
           domain-containing protein contains Pfam domain, PF03760:
           Late embryogenesis abundant (LEA) group 1
          Length = 97

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +1

Query: 547 ETSKRSSGHNPFHERRRALTASTPLRGRSHEAPKKTYGTKSTQTEYPP 690
           E SK +      H+ +    A   + G  H     TY T++T   YPP
Sbjct: 48  EKSKEAQAKADLHQSKAEHAADAQVHGH-HLPGHSTYPTRATGANYPP 94


>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
           polycomb-group protein identical to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 902

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 344 TNTVPFNVDALTNGQPIEQHPTEKDVEGPSENNSTSDSEAEMQYLFNRSKITAS 505
           T T P    +  NG+  +  P+E           TSDSE  +Q   N  K+++S
Sbjct: 346 TKTTPTKFSSKLNGRKPKTFPSESASSNEKCALETSDSENGLQQDTNSDKVSSS 399


>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profile: PF02309 AUX/IAA family
          Length = 1086

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 347 SSAHMNANTTPKHVLLLYPASPEDVGIPLNRF 252
           ++AH NAN++P  +     ASP +  +PL ++
Sbjct: 251 AAAHANANSSPFTIFFNPRASPSEFVVPLAKY 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,034,292
Number of Sequences: 28952
Number of extensions: 296231
Number of successful extensions: 834
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)