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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0559
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    72   9e-14
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    52   6e-08
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    52   6e-08
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    52   6e-08
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    43   5e-05
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    33   0.051
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    31   0.20 
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    30   0.36 
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        30   0.36 
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    30   0.36 
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    29   0.83 
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    29   0.83 
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    28   1.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.9  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    27   3.3  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    27   3.3  
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    27   3.3  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    25   7.7  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    25   7.7  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   7.7  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   7.7  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   7.7  

>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 71.7 bits (168), Expect = 9e-14
 Identities = 31/37 (83%), Positives = 35/37 (94%)
 Frame = +2

Query: 569 KEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 679
           KEHVN+VFIGHVDAGKST+GG I+ LTGMVDKRT+EK
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEK 272


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = +2

Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
           +K H+NVV IGHVD+GKST  G ++   G +DKRT+EK+
Sbjct: 4   EKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = +2

Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
           +K H+NVV IGHVD+GKST  G ++   G +DKRT+EK+
Sbjct: 4   EKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = +2

Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
           +K H+NVV IGHVD+GKST  G ++   G +DKRT+EK+
Sbjct: 4   EKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
 Frame = +2

Query: 518 KKIPKKKP------PRVEDTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 679
           KKI K+ P      P + +  + K  V++V  GHVD+GKST+ G+IM   G ++ R+++K
Sbjct: 152 KKIKKQNPTDLVSVPEIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQK 211


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 32.7 bits (71), Expect = 0.051
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 566 KKEHVNVVFIGHVDAGKSTIGGQI 637
           KK HVN+  IGHVD GK+T+   I
Sbjct: 50  KKPHVNIGTIGHVDHGKTTLTAAI 73


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 581 NVVFIGHVDAGKSTIGGQIMSLTGMVDK 664
           N   I H+D GKST+   I+ LTG++++
Sbjct: 60  NWAVIAHIDHGKSTLSDCILKLTGVINE 87


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 515 TKKIPKKKPPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSL 646
           +KK+  K   ++E+   K + +  V+ +G  D+GKSTI  QI  L
Sbjct: 13  SKKLNSKIEKQIENASKKDKKIYKVLLLGASDSGKSTISKQIKIL 57


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 547 SRRYTKQKRTCKCSIYRTCRCRKVDYWWSNNVTHWNG 657
           SR+ ++  +TCKC    T RC K      +N  +WNG
Sbjct: 289 SRKNSEVSKTCKCLQKETIRCNK-----KSNCYNWNG 320


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 11/49 (22%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 524 IPKKKPPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMVDKR 667
           +P   P ++   +  +E++ N   + HVD GK+T+   +++  G++  +
Sbjct: 1   MPVIPPEKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSK 49


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 539 PPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 658
           P  V +   K  +V N+  I HVD GKST+   ++   G++
Sbjct: 6   PEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII 46


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 539 PPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 658
           P  V +   K  +V N+  I HVD GKST+   ++   G++
Sbjct: 6   PEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII 46


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 124 GAKDSNDVSSKISTLNVNAMEFVPSFS-KPSQASDSTDSPTSPQ-NQK 261
           G KD N +S  I +    A   + + S KP  AS +T++P+S Q NQK
Sbjct: 477 GVKDLNKISKFIQSDKPFADAIIQTQSTKPPTASSTTNNPSSSQINQK 524


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 52  SATIMSNNGAPDSWENEAEIIGEKGAKD-SNDVSSKISTLNVNAMEFVPSFSKPSQASDS 228
           S+TI S++ +P S    +     K +   S+ VSS  ST +        S S+P+ +S  
Sbjct: 340 SSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSH 399

Query: 229 TDSPTSPQNQKA 264
           + S +S ++  +
Sbjct: 400 SSSLSSHKSSSS 411



 Score = 26.6 bits (56), Expect = 3.3
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = +1

Query: 52  SATIMSNNGAPDSWENEAEIIGEKGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDST 231
           S+TI S++ +  S  + +  I    +  S+  SS  STL+ ++M    SFS    +S ST
Sbjct: 287 SSTISSSSSSSSSPTSTSSTI----SSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSST 342

Query: 232 DSPTS 246
            S +S
Sbjct: 343 ISSSS 347


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 563 SKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 679
           S++  +N+  IGHV  GKST+   I  +  +  K  LE+
Sbjct: 19  SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELER 57


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 554 DTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMV 658
           D +  K+  N+    H+D+GK+T   +++  TG +
Sbjct: 52  DKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI 86


>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 502 RMGINKKDSKEKTTTSRRYTKQKRT 576
           R+ I KK+S EK  + ++Y ++K+T
Sbjct: 151 RISILKKESNEKRLSEKKYKQKKKT 175


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 176 FTFNVEIFED-TSLESFAPFSPIISASFSHESGAPLLDIIVAERKINNLVFFPG 18
           +TF+ ++F     L        + + SF H  G P++D I  E K N ++ F G
Sbjct: 94  WTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK-NRILIFEG 146


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 131 FAPFSPIISASFSHESGAPLL 69
           F+P +P  + S++H + APLL
Sbjct: 282 FSPINPYYAKSWNHTASAPLL 302


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +1

Query: 436 LMMHYSHLKKTMNRKKKNWIHKRMGINKKDSKEKTTTSRRYTKQKR 573
           L + Y+H+ +    K +N + +    N + +K + +   +YTK+ R
Sbjct: 96  LKVEYTHIVERYKNKLENGVDQIHHSNNEKAKIRFSKIEKYTKETR 141


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 506 WELTKKIPKKKPPRVEDTRSKKEHVNVV 589
           W +T  +P K+PP         EH +V+
Sbjct: 263 WTVTSNVPNKEPPISVQLLHTLEHTSVI 290


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 481 KKNWIHKRMGINKKDSKEKTTTSRRYTKQKRTCKCSIY 594
           KKNW        KK  K  T +SR     K   +CS+Y
Sbjct: 355 KKNWATVLSNGIKKVIKTITASSRHANYAKALPRCSVY 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,430
Number of Sequences: 5004
Number of extensions: 38338
Number of successful extensions: 197
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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