BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0559 (683 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 72 9e-14 SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 52 6e-08 SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 52 6e-08 SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 52 6e-08 SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 43 5e-05 SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 33 0.051 SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.20 SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 30 0.36 SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 30 0.36 SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.36 SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 29 0.83 SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 29 0.83 SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 28 1.1 SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.9 SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 27 3.3 SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 27 3.3 SPAC589.11 |mug82||translation release factor |Schizosaccharomyc... 27 3.3 SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 25 7.7 SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 7.7 SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 25 7.7 SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 25 7.7 SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 7.7 >SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 662 Score = 71.7 bits (168), Expect = 9e-14 Identities = 31/37 (83%), Positives = 35/37 (94%) Frame = +2 Query: 569 KEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 679 KEHVN+VFIGHVDAGKST+GG I+ LTGMVDKRT+EK Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEK 272 >SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual Length = 460 Score = 52.4 bits (120), Expect = 6e-08 Identities = 22/39 (56%), Positives = 30/39 (76%) Frame = +2 Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682 +K H+NVV IGHVD+GKST G ++ G +DKRT+EK+ Sbjct: 4 EKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42 >SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual Length = 460 Score = 52.4 bits (120), Expect = 6e-08 Identities = 22/39 (56%), Positives = 30/39 (76%) Frame = +2 Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682 +K H+NVV IGHVD+GKST G ++ G +DKRT+EK+ Sbjct: 4 EKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42 >SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual Length = 460 Score = 52.4 bits (120), Expect = 6e-08 Identities = 22/39 (56%), Positives = 30/39 (76%) Frame = +2 Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682 +K H+NVV IGHVD+GKST G ++ G +DKRT+EK+ Sbjct: 4 EKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42 >SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 592 Score = 42.7 bits (96), Expect = 5e-05 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 6/60 (10%) Frame = +2 Query: 518 KKIPKKKP------PRVEDTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 679 KKI K+ P P + + + K V++V GHVD+GKST+ G+IM G ++ R+++K Sbjct: 152 KKIKKQNPTDLVSVPEIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQK 211 >SPBC9B6.04c |tuf1||mitochondrial translation elongation factor EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 439 Score = 32.7 bits (71), Expect = 0.051 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +2 Query: 566 KKEHVNVVFIGHVDAGKSTIGGQI 637 KK HVN+ IGHVD GK+T+ I Sbjct: 50 KKPHVNIGTIGHVDHGKTTLTAAI 73 >SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 646 Score = 30.7 bits (66), Expect = 0.20 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +2 Query: 581 NVVFIGHVDAGKSTIGGQIMSLTGMVDK 664 N I H+D GKST+ I+ LTG++++ Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINE 87 >SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 354 Score = 29.9 bits (64), Expect = 0.36 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = +2 Query: 515 TKKIPKKKPPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSL 646 +KK+ K ++E+ K + + V+ +G D+GKSTI QI L Sbjct: 13 SKKLNSKIEKQIENASKKDKKIYKVLLLGASDSGKSTISKQIKIL 57 >SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 29.9 bits (64), Expect = 0.36 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +1 Query: 547 SRRYTKQKRTCKCSIYRTCRCRKVDYWWSNNVTHWNG 657 SR+ ++ +TCKC T RC K +N +WNG Sbjct: 289 SRKNSEVSKTCKCLQKETIRCNK-----KSNCYNWNG 320 >SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1000 Score = 29.9 bits (64), Expect = 0.36 Identities = 11/49 (22%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +2 Query: 524 IPKKKPPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMVDKR 667 +P P ++ + +E++ N + HVD GK+T+ +++ G++ + Sbjct: 1 MPVIPPEKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSK 49 >SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 842 Score = 28.7 bits (61), Expect = 0.83 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +2 Query: 539 PPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 658 P V + K +V N+ I HVD GKST+ ++ G++ Sbjct: 6 PEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII 46 >SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elongation factor 2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 842 Score = 28.7 bits (61), Expect = 0.83 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +2 Query: 539 PPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 658 P V + K +V N+ I HVD GKST+ ++ G++ Sbjct: 6 PEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII 46 >SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase|Schizosaccharomyces pombe|chr 1|||Manual Length = 885 Score = 28.3 bits (60), Expect = 1.1 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = +1 Query: 124 GAKDSNDVSSKISTLNVNAMEFVPSFS-KPSQASDSTDSPTSPQ-NQK 261 G KD N +S I + A + + S KP AS +T++P+S Q NQK Sbjct: 477 GVKDLNKISKFIQSDKPFADAIIQTQSTKPPTASSTTNNPSSSQINQK 524 >SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 534 Score = 27.5 bits (58), Expect = 1.9 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +1 Query: 52 SATIMSNNGAPDSWENEAEIIGEKGAKD-SNDVSSKISTLNVNAMEFVPSFSKPSQASDS 228 S+TI S++ +P S + K + S+ VSS ST + S S+P+ +S Sbjct: 340 SSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSH 399 Query: 229 TDSPTSPQNQKA 264 + S +S ++ + Sbjct: 400 SSSLSSHKSSSS 411 Score = 26.6 bits (56), Expect = 3.3 Identities = 21/65 (32%), Positives = 34/65 (52%) Frame = +1 Query: 52 SATIMSNNGAPDSWENEAEIIGEKGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDST 231 S+TI S++ + S + + I + S+ SS STL+ ++M SFS +S ST Sbjct: 287 SSTISSSSSSSSSPTSTSSTI----SSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSST 342 Query: 232 DSPTS 246 S +S Sbjct: 343 ISSSS 347 >SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 26.6 bits (56), Expect = 3.3 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +2 Query: 563 SKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 679 S++ +N+ IGHV GKST+ I + + K LE+ Sbjct: 19 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELER 57 >SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schizosaccharomyces pombe|chr 2|||Manual Length = 770 Score = 26.6 bits (56), Expect = 3.3 Identities = 10/35 (28%), Positives = 20/35 (57%) Frame = +2 Query: 554 DTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMV 658 D + K+ N+ H+D+GK+T +++ TG + Sbjct: 52 DKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI 86 >SPAC589.11 |mug82||translation release factor |Schizosaccharomyces pombe|chr 1|||Manual Length = 182 Score = 26.6 bits (56), Expect = 3.3 Identities = 10/25 (40%), Positives = 18/25 (72%) Frame = +1 Query: 502 RMGINKKDSKEKTTTSRRYTKQKRT 576 R+ I KK+S EK + ++Y ++K+T Sbjct: 151 RISILKKESNEKRLSEKKYKQKKKT 175 >SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces pombe|chr 1|||Manual Length = 235 Score = 25.4 bits (53), Expect = 7.7 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = -1 Query: 176 FTFNVEIFED-TSLESFAPFSPIISASFSHESGAPLLDIIVAERKINNLVFFPG 18 +TF+ ++F L + + SF H G P++D I E K N ++ F G Sbjct: 94 WTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK-NRILIFEG 146 >SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosaccharomyces pombe|chr 2|||Manual Length = 352 Score = 25.4 bits (53), Expect = 7.7 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = -1 Query: 131 FAPFSPIISASFSHESGAPLL 69 F+P +P + S++H + APLL Sbjct: 282 FSPINPYYAKSWNHTASAPLL 302 >SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces pombe|chr 1|||Manual Length = 609 Score = 25.4 bits (53), Expect = 7.7 Identities = 11/46 (23%), Positives = 24/46 (52%) Frame = +1 Query: 436 LMMHYSHLKKTMNRKKKNWIHKRMGINKKDSKEKTTTSRRYTKQKR 573 L + Y+H+ + K +N + + N + +K + + +YTK+ R Sbjct: 96 LKVEYTHIVERYKNKLENGVDQIHHSNNEKAKIRFSKIEKYTKETR 141 >SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosaccharomyces pombe|chr 1|||Manual Length = 586 Score = 25.4 bits (53), Expect = 7.7 Identities = 9/28 (32%), Positives = 14/28 (50%) Frame = +2 Query: 506 WELTKKIPKKKPPRVEDTRSKKEHVNVV 589 W +T +P K+PP EH +V+ Sbjct: 263 WTVTSNVPNKEPPISVQLLHTLEHTSVI 290 >SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Schizosaccharomyces pombe|chr 2|||Manual Length = 1001 Score = 25.4 bits (53), Expect = 7.7 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = +1 Query: 481 KKNWIHKRMGINKKDSKEKTTTSRRYTKQKRTCKCSIY 594 KKNW KK K T +SR K +CS+Y Sbjct: 355 KKNWATVLSNGIKKVIKTITASSRHANYAKALPRCSVY 392 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,231,430 Number of Sequences: 5004 Number of extensions: 38338 Number of successful extensions: 197 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 188 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 196 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 315915086 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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