Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0559
(683 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 52 6e-07
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 36 0.031
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_58692| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44) 30 2.0
SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_31430| Best HMM Match : Exo70 (HMM E-Value=2) 29 3.5
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_55836| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_11030| Best HMM Match : 7tm_1 (HMM E-Value=7.7e-16) 28 8.1
SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20) 28 8.1
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 28 8.1
SB_13850| Best HMM Match : WD40 (HMM E-Value=3.1e-06) 28 8.1
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 51.6 bits (118), Expect = 6e-07
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +2
Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
+K H+N+V IGHVD+GKST G ++ G +DKRT+EK+
Sbjct: 4 EKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 35.9 bits (79), Expect = 0.031
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 79 APDSWENEAEIIGEKGAKDSND-VSSKISTLNVNAMEFVPSFSKPSQASDSTDSPTS-PQ 252
APDSW++ I + G DS +++ ++LNVNA FVP+ + PS P P
Sbjct: 31 APDSWDS----IEDPGPGDSGQSLAADFNSLNVNAKPFVPNVNAPSFVPSFLTKPDPVPA 86
Query: 253 NQKAVLRIQ 279
++A +Q
Sbjct: 87 QEEAKENVQ 95
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +2
Query: 644 LTGMVDKRTLEKY 682
LTG VDKRTLEKY
Sbjct: 167 LTGQVDKRTLEKY 179
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 581 NVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 679
N + HVD GKST+ +++ +TG + K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_58692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 533 KKPPRVEDTRSKKEHVNVVFIGHV 604
KK VE+ + EHVN++FIGHV
Sbjct: 13 KKRVEVEEEGNGLEHVNIIFIGHV 36
>SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44)
Length = 667
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 163 TLNVNAMEFVPSFSKPSQASDSTDSPTSPQNQKAVLRIQPGVPS 294
T V E PS S S A +S + NQK +R +P VPS
Sbjct: 256 TNGVVPYELDPSISSSSYAVSVINSAIAEYNQKTCIRFRPRVPS 299
>SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 369 PPPTTASVPPDVSPTADSW 425
PP TA+ PP SP+ D W
Sbjct: 755 PPAATAATPPPSSPSGDEW 773
>SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)
Length = 853
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 477 PVHCFLQV*VVHHQPQLPSCLQWAR 403
P CF + HHQ LP C +++R
Sbjct: 336 PTECFFMTFLAHHQAILPCCRRYSR 360
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 49 RSATIMSNNGAPDSWENEAEIIGEKGAKDSNDVSSKI----STLNVNAMEFVPSFSKPSQ 216
+S +S NGAP + ++ AE + A D + S+K+ L N + VP +P Q
Sbjct: 2411 KSFVQLSGNGAP-TLKSLAEWLERNRAYDVAEESAKLVLEEGNLPSNLLTRVPKSPRPKQ 2469
Query: 217 ASDSTDSPTS 246
+ S+ +P+S
Sbjct: 2470 TTPSSANPSS 2479
>SB_55836| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 121 KGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDSTDSPTSPQNQKA 264
KGA+ N VS T E VPS PS+A ++T SP+ K+
Sbjct: 50 KGAEKENTVSVNGETTTEGKSEIVPS---PSEAMNATFIKNSPEVPKS 94
>SB_11030| Best HMM Match : 7tm_1 (HMM E-Value=7.7e-16)
Length = 304
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 594 INTTFTCSFLLRVSSTRGGFFFGIFFVNSHPLVYPILLLPVHCFLQV*VVHH 439
I F CS +LR R +F + L Y L++PVH + ++H+
Sbjct: 20 IENLFVCSLVLRYKQLRSHTNGFVFSLALADLAYGSLVIPVHLAIPPKLLHN 71
>SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)
Length = 142
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 506 WELTKKIPKKKPPRVEDTRSKKEHVNV 586
W TKK+P K +++DTR +K+ ++
Sbjct: 71 WVFTKKLPAFKIGKLDDTRKEKKETSL 97
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 545 RVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 658
++ KK ++ N+ I HVD GKST+ ++S G++
Sbjct: 7 QIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGII 45
>SB_13850| Best HMM Match : WD40 (HMM E-Value=3.1e-06)
Length = 229
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 167 NVEIFEDTSLESFAPFSPIISASFSHESGAPL 72
N E DT++E++ FS + S+ F H G P+
Sbjct: 40 NQEPVSDTNVETWKSFSGVRSSKFRHIIGVPM 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,840,739
Number of Sequences: 59808
Number of extensions: 295504
Number of successful extensions: 1518
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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