Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0559
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 78 5e-15
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 52 4e-07
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 52 4e-07
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 52 4e-07
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 52 4e-07
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 52 4e-07
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 37 0.015
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 37 0.015
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr... 32 0.33
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 31 0.77
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 31 0.77
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 31 0.77
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 1.0
U55367-2|AAA97988.2| 356|Caenorhabditis elegans G protein, alph... 29 2.3
AY008132-1|AAG32085.1| 356|Caenorhabditis elegans heterotrimeri... 29 2.3
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 29 3.1
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 28 7.1
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 28 7.1
AC006695-8|AAF39976.1| 351|Caenorhabditis elegans Hypothetical ... 28 7.1
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 27 9.4
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 27 9.4
AC024750-3|AAF60440.1| 384|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 78.2 bits (184), Expect = 5e-15
Identities = 34/43 (79%), Positives = 39/43 (90%)
Frame = +2
Query: 554 DTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
D + KEH+N+VF+GHVDAGKSTIGGQ+M LTGMVDKRTLEKY
Sbjct: 102 DDGTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKY 144
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +2
Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
+K H+N+V IGHVD+GKST G ++ G +DKRT+EK+
Sbjct: 4 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +2
Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
+K H+N+V IGHVD+GKST G ++ G +DKRT+EK+
Sbjct: 4 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +2
Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
+K H+N+V IGHVD+GKST G ++ G +DKRT+EK+
Sbjct: 4 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +2
Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
+K H+N+V IGHVD+GKST G ++ G +DKRT+EK+
Sbjct: 4 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +2
Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
+K H+N+V IGHVD+GKST G ++ G +DKRT+EK+
Sbjct: 4 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = +2
Query: 524 IPKKKP-PRVEDTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
+ +K P PRV D K+ +N++ +GHVDAGKST+ G ++ +VD RT++K+
Sbjct: 156 VARKTPKPRVAD----KDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKF 205
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = +2
Query: 524 IPKKKP-PRVEDTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
+ +K P PRV D K+ +N++ +GHVDAGKST+ G ++ +VD RT++K+
Sbjct: 174 VARKTPKPRVAD----KDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKF 223
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 36.7 bits (81), Expect = 0.015
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +1
Query: 85 DSWENEAEIIGEKGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDSTDSPTSPQNQKA 264
D+ EN+ EI E + SSK+ST +N + + + DS D +P+NQ+
Sbjct: 999 DATENQPEITLELDVEKHEIDSSKVSTSTINLNDESMETRNTNDSKDSFDDEVNPRNQRL 1058
Query: 265 VLRI 276
V+ I
Sbjct: 1059 VVEI 1062
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 36.7 bits (81), Expect = 0.015
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +1
Query: 85 DSWENEAEIIGEKGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDSTDSPTSPQNQKA 264
D+ EN+ EI E + SSK+ST +N + + + DS D +P+NQ+
Sbjct: 999 DATENQPEITLELDVEKHEIDSSKVSTSTINLNDESMETRNTNDSKDSFDDEVNPRNQRL 1058
Query: 265 VLRI 276
V+ I
Sbjct: 1059 VVEI 1062
>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical
protein T20F7.5 protein.
Length = 1065
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +1
Query: 52 SATIMSNNGAPDSWENEAEIIGEKGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDST 231
S+ ++SN+ DS + + +++D+ S IST + + S S PS+ + S+
Sbjct: 245 SSAVLSNSNTSDSINTSEQNLESPRTSEASDILSTISTFTQENVSELQSISPPSEENGSS 304
Query: 232 DS 237
++
Sbjct: 305 EN 306
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 569 KEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
K H+NV IGHVD GK+T+ I + KY
Sbjct: 47 KPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKY 84
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 569 KEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
K H+NV IGHVD GK+T+ I + KY
Sbjct: 48 KPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKY 85
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 569 KEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
K H+NV IGHVD GK+T+ I + KY
Sbjct: 48 KPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKY 85
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 542 PRVEDTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 679
P E+ S++ +N+ IGHV GKST+ + + KR LE+
Sbjct: 29 PLTEEVISRQATINIGTIGHVAHGKSTLVKAFSGVHTVKFKRELER 74
>U55367-2|AAA97988.2| 356|Caenorhabditis elegans G protein, alpha
subunit protein 10 protein.
Length = 356
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +2
Query: 509 ELTKKIPKKKPPRVEDTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 679
E+ K++ KKK ++E T V+ +G ++GKST+ Q+ ++TG K L +
Sbjct: 22 EIEKQLEKKKNMQLEQT--------VLLLGPGESGKSTVMKQMRAMTGNYTKTELHE 70
>AY008132-1|AAG32085.1| 356|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 356
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +2
Query: 509 ELTKKIPKKKPPRVEDTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 679
E+ K++ KKK ++E T V+ +G ++GKST+ Q+ ++TG K L +
Sbjct: 22 EIEKQLEKKKNMQLEQT--------VLLLGPGESGKSTVMKQMRAMTGNYTKTELHE 70
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 581 NVVFIGHVDAGKSTIGGQIMSLTGMV 658
N+ I HVDAGK+T+ +++ L G +
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 572 EHV-NVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 679
EH+ NV + HVD GK++ ++S ++ R K
Sbjct: 18 EHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGK 54
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 572 EHV-NVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 679
EH+ NV + HVD GK++ ++S ++ R K
Sbjct: 18 EHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGK 54
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 448 YSHLKKTMNRKKKNWIHKRMGINKKDSKEKTTTSR 552
+ HL +MNRK KN + K + + K+ T S+
Sbjct: 1343 FKHLNVSMNRKNKNLLEKLLQLGPLKIKKSPTPSK 1377
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 448 YSHLKKTMNRKKKNWIHKRMGINKKDSKEKTTTSR 552
+ HL +MNRK KN + K + + K+ T S+
Sbjct: 1343 FKHLNVSMNRKNKNLLEKLLQLGPLKIKKSPTPSK 1377
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMV 658
K+ N+ I HVD GKST+ ++S G++
Sbjct: 16 KRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 46
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMV 658
K+ N+ I HVD GKST+ ++S G++
Sbjct: 16 KRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 46
>AC006695-8|AAF39976.1| 351|Caenorhabditis elegans Hypothetical
protein W06H8.4 protein.
Length = 351
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 625 NSRLSCIYMSYKYYIYMFFFASCIF 551
N L +Y+SY + ++ F FAS +F
Sbjct: 223 NPELCSVYLSYYHVVFSFTFASLLF 247
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 400 SGGTDAVVGGGSSTRGEADA 341
SGG+D+ VGGG T D+
Sbjct: 256 SGGSDSAVGGGGDTNASTDS 275
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 400 SGGTDAVVGGGSSTRGEADA 341
SGG+D+ VGGG T D+
Sbjct: 256 SGGSDSAVGGGGDTNASTDS 275
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +2
Query: 581 NVVFIGHVDAGKSTIGGQIMSLTGMV---DKRTLEK 679
N + HVD GKST+ +++ + G V K+ L+K
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDK 79
>AC024750-3|AAF60440.1| 384|Caenorhabditis elegans Hypothetical
protein Y17G9A.4 protein.
Length = 384
Score = 27.5 bits (58), Expect = 9.4
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +1
Query: 1 LNNFN*PGKKTKLFILRSATIMSNN-GAPDSWENEAEIIGEKGAK---DSNDVSSKISTL 168
+ ++N PGK + + I RS S A D+ ENE +II +G D NDV K+S
Sbjct: 125 ITSYN-PGK-SNIVIYRSHYWRSTTENAKDNIENEVKIICAEGLNKQPDYNDVPVKLSE- 181
Query: 169 NVNAMEFVPSFSKPSQAS 222
N+ FV K S
Sbjct: 182 NLENSRFVGLMGKDLDVS 199
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,625,196
Number of Sequences: 27780
Number of extensions: 230630
Number of successful extensions: 1242
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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