Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0559
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    52   7e-09
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    52   7e-09
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    28   0.095
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    28   0.095
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.22 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   2.7  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   3.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.3  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 51.6 bits (118), Expect = 7e-09
 Identities = 21/39 (53%), Positives = 30/39 (76%)
 Frame = +2

Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
           +K H+N+V IGHVD+GKST  G ++   G +DKRT+EK+
Sbjct: 4   EKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 51.6 bits (118), Expect = 7e-09
 Identities = 21/39 (53%), Positives = 30/39 (76%)
 Frame = +2

Query: 566 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKY 682
           +K H+N+V IGHVD+GKST  G ++   G +DKRT+EK+
Sbjct: 4   EKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 0.095
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 509 ELTKKIPKKKPPRVEDTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 679
           +L+K    K      +  S++  +N+  IGHV  GKSTI   I  +  +  K  LE+
Sbjct: 20  DLSKLDVSKLTALSREVISRQATINIGTIGHVAHGKSTIVKAISGVQTVRFKNELER 76


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 0.095
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 536 KPPRVEDTRSKKEHVNVVFIGHVDAGKSTI 625
           K P   +++  K H  V  +GHVD GK+T+
Sbjct: 132 KRPLPNESQLIKRHPIVTIMGHVDHGKTTL 161


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 445 HYSHLKKTMNRKKKNWIHKRMGINKKDSKEKTTTSRRYTKQKRTCK 582
           HY   K+  + +  NW HK   I+ +   E+ T +        TC+
Sbjct: 175 HYDRYKEEESNENYNWEHKETHIDWQPEDEECTEATAGAVVLETCQ 220


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
 Frame = +1

Query: 496 HKRMGINKKDSKEKTTTSRRYTKQKRTCKCSIYRTCRCR------KVDYWWSNNVTHWNG 657
           HKR   +++  ++     R Y K + T K   +R  R R      K+    SN   H N 
Sbjct: 269 HKRYSRSREREQKSYKNEREYRKYRETSK-ERFRDRRERERSKESKIISSLSNKTIHNNN 327

Query: 658 RQKNIRK 678
             KN  K
Sbjct: 328 NYKNYNK 334


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 478 KKKNWIHKRMGINKKDSKEKTTTSRRYTKQK 570
           KKK+  ++++   KK   E+ T+ +RY++ +
Sbjct: 246 KKKDRRYEKLHNEKKKLLEERTSRKRYSRSR 276


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 430 LRLMMHYSHLKKTMNRKKKNWIHKRMGINKKDSK 531
           L   M   +L +TMNRK+ + +   M I+  + K
Sbjct: 448 LEKFMILCNLMRTMNRKQISELESNMQISPNELK 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,007
Number of Sequences: 438
Number of extensions: 2990
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)