Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0558
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    78   7e-16
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    54   1e-08
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    43   2e-05
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    33   0.027
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    31   0.082
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    29   0.44 
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    28   0.58 
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    28   0.76 
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   2.3  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   3.1  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   5.4  
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    25   5.4  
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    25   7.1  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    25   7.1  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   7.1  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    24   9.4  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    24   9.4  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 77.8 bits (183), Expect = 7e-16
 Identities = 39/66 (59%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
 Frame = +3

Query: 255 AAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 431
           AAVSKTA APIERVKLL+Q Q  + +      RYKGI + F R   E+G++S WRGN AN
Sbjct: 38  AAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTAN 97

Query: 432 VIRYFP 449
           V+RYFP
Sbjct: 98  VLRYFP 103


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 53.6 bits (123), Expect = 1e-08
 Identities = 26/65 (40%), Positives = 41/65 (63%)
 Frame = +3

Query: 255 AAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 434
           A VS+TAV+P+ER+K++ QVQ+       ++ Y  +    V+I   +GL+ F+RGN  N 
Sbjct: 31  ATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNC 83

Query: 435 IRYFP 449
           +R FP
Sbjct: 84  LRAFP 88



 Score = 30.7 bits (66), Expect = 0.11
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +3

Query: 249 YLAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 428
           +   + +T   P + ++   QV  +         YK I  A   I K +G+  F+RG  +
Sbjct: 235 FTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYSS 291

Query: 429 NVIRYFP 449
           N+++  P
Sbjct: 292 NMLKIIP 298


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 24/63 (38%), Positives = 36/63 (57%)
 Frame = +3

Query: 261 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 440
           V+K+ VAP++RVK+L Q  H S +  A  R+ G+  A   I    GL   ++G+ A + R
Sbjct: 30  VAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQGHTATLYR 88

Query: 441 YFP 449
            FP
Sbjct: 89  VFP 91


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 32.7 bits (71), Expect = 0.027
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 270 TAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 449
           T V P+  ++  LQ Q  S   A    Y G +D F +  K +G    ++G   N+++  P
Sbjct: 351 TIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAP 407


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 31.1 bits (67), Expect = 0.082
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 276 VAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 443
           V P E +K+ LQ V++ SK       Y G VD F +I K++ +L+ + G  A + R+
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRH 171


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 336 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 434
           A    Y    DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 324 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 449
           S  I    +Y G++  F  +  EQG++  + G  A+++R  P
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVP 344


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 282 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 419
           PI+ VK  +Q       ++A + YK  +    +I  + GLL FW G
Sbjct: 223 PIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSG 262


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 72  YEITPNLLFKNQELVFRDPPSACAATPTSTY 164
           YE+  N  F N       PP AC+   TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 376 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 269
           T+ + + +  WSA I +LT C    SLT S+  T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 243 WRYLAAVSKTAVAPIE-RVKL-LLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 410
           +RYL   S  ++ PI  RV L L ++ H SK   +D    G+V     IP+E G + +
Sbjct: 350 FRYLILFS--SIIPINLRVNLDLAKIVH-SKNTESDPNLPGVVVRSSNIPEELGRIEY 404


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 276 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 419
           V P+E V++ LQ+Q   K +     Y G  D   +I  + GL    +G
Sbjct: 130 VGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQYGLSGIMKG 172


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 84  PNLLFKNQELVFRDPPSACAATPT 155
           P  + K  E + RDPP    A PT
Sbjct: 4   PKRIIKEIETLTRDPPPGIVAAPT 27


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +2

Query: 272 RRSTHRACQAAAPSTARQQADRR-RPALQGYRRRLRAHPQGAGSP 403
           RR   RA Q   P+T R  A+ R RP      RR    PQ A  P
Sbjct: 28  RRRQARAGQTK-PATTRPMAEARARPGATAVPRRSPTSPQSAYVP 71


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 52  TLC--APVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLV 174
           T+C  AP +  L  ++C+K+   C  +  PR     PR+ HL+
Sbjct: 551 TICNIAPFVENLSFVTCAKLMQLCSSLSSPRFLFRNPRN-HLL 592


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +2

Query: 230 RTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRRPALQGYRRRLRAHPQ 388
           RTS   + R+R  D   T R     +PS   + +++ R      R   R+H +
Sbjct: 184 RTSRSTLDRKRFHDASDTERNRYGRSPSPHSRFSEKPRGERYDIRSYSRSHKE 236


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 102 NQELVFRDPPSACAATPTSTYSPSEDHIIEQNVEP-RRSGR 221
           N EL     PS+ AATPT +   S   +I   +    RSG+
Sbjct: 75  NDELAESSKPSSGAATPTRSAPKSSAGLINSGLRALDRSGK 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,502
Number of Sequences: 5004
Number of extensions: 35115
Number of successful extensions: 104
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)