Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0558
(451 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 7e-15
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 5e-11
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 53 1e-07
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 42 2e-04
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 40 7e-04
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 38 0.005
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 36 0.012
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 36 0.015
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.027
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 35 0.036
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 34 0.047
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 32 0.25
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 31 0.33
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.33
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.44
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 31 0.44
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.44
SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 31 0.58
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 31 0.58
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.77
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 30 0.77
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35) 30 1.0
SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 29 1.3
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 29 1.3
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012) 29 1.8
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 28 3.1
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 28 4.1
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 4.1
SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16) 28 4.1
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0) 27 5.4
SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39) 27 5.4
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 27 5.4
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 27 5.4
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 27 7.2
SB_24124| Best HMM Match : DUF1213 (HMM E-Value=3.9) 27 7.2
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5) 27 7.2
SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30) 27 9.5
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 27 9.5
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 77.0 bits (181), Expect = 7e-15
Identities = 38/66 (57%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +3
Query: 255 AAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 431
A +SKTA APIERVKLL+Q Q + K D YKG++D R + +G LSFWRGN AN
Sbjct: 20 AIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEGFLSFWRGNLAN 79
Query: 432 VIRYFP 449
IRYFP
Sbjct: 80 CIRYFP 85
Score = 32.7 bits (71), Expect = 0.14
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +3
Query: 348 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 440
+YKG +D ++I K++G +S +G AN++R
Sbjct: 248 KYKGSIDCTIQILKKEGAMSLMKGAGANILR 278
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 64.1 bits (149), Expect = 5e-11
Identities = 29/64 (45%), Positives = 47/64 (73%)
Frame = +3
Query: 258 AVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVI 437
AVS+T+V+P+ERVK+LLQ+Q + ++KG++ ++I KE+G+L +++GN NVI
Sbjct: 46 AVSRTSVSPLERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGILGYFKGNGTNVI 99
Query: 438 RYFP 449
R FP
Sbjct: 100 RIFP 103
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 57.6 bits (133), Expect = 4e-09
Identities = 32/66 (48%), Positives = 42/66 (63%)
Frame = +3
Query: 252 LAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 431
LA VS+TA AP++R+K+LLQVQ A+ GIV F + +E G+ S WRGN AN
Sbjct: 146 LAGVSRTATAPLDRLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGIKSLWRGNGAN 199
Query: 432 VIRYFP 449
VI+ P
Sbjct: 200 VIKIAP 205
Score = 31.5 bits (68), Expect = 0.33
Identities = 17/62 (27%), Positives = 36/62 (58%)
Frame = +3
Query: 264 SKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 443
S+T++ P+E +K L ++ + Y+G++ A I +++G+ SF+RG F +++
Sbjct: 244 SQTSIYPLEVLKTRLAIRKTGQ-------YRGLLHAASVIYQKEGIRSFYRGLFPSLLGI 296
Query: 444 FP 449
P
Sbjct: 297 IP 298
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 53.2 bits (122), Expect = 1e-07
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +3
Query: 255 AAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 416
A +SKTA APIERVKLL+Q Q + K YKG+VD +R + +G+ SFWR
Sbjct: 21 AIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDCTMRTYRAEGIGSFWR 75
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +3
Query: 255 AAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 434
A ++++ +P+E VK+L QV + G++ F + K +G+ +FW+GN +
Sbjct: 69 AVLARSLTSPLEVVKVLAQV-------GTQEAKPGLIRTFASVYKREGIKAFWKGNGVSC 121
Query: 435 IRYFP 449
IR FP
Sbjct: 122 IRLFP 126
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +3
Query: 261 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 440
++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++G + +
Sbjct: 165 IAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKGVTPSFLG 221
Query: 441 YFP 449
FP
Sbjct: 222 LFP 224
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 40.3 bits (90), Expect = 7e-04
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = +3
Query: 276 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 449
+AP++ VK+ LQ+Q +K+ + Y+G VD V++ + +GL ++GN +R P
Sbjct: 51 IAPVDLVKIKLQMQTEAKR-STRSVYRGPVDCLVKLYRSRGLAGCFQGNTVTAVRDIP 107
Score = 31.9 bits (69), Expect = 0.25
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 348 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYF 446
RYKG++D ++ KE+G++ F RG + ++R F
Sbjct: 170 RYKGMMDCALQSYKEEGMIVFTRGIWPTLLRGF 202
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 37.5 bits (83), Expect = 0.005
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +3
Query: 261 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 419
++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++G
Sbjct: 434 IAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKG 483
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 36.3 bits (80), Expect = 0.012
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +3
Query: 258 AVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVI 437
A TAV PI+ VK +Q Q + A++ YK +D F ++ + +G + +RG ++
Sbjct: 925 ATGATAVYPIDLVKTRMQNQRAV--LEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLL 982
Query: 438 RYFP 449
P
Sbjct: 983 GVSP 986
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 35.9 bits (79), Expect = 0.015
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 279 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 419
AP ERVK LLQVQ K+ RY+G+ D +++ + GL ++G
Sbjct: 179 APTERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGLRGVFKG 222
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 35.1 bits (77), Expect = 0.027
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +3
Query: 261 VSKTAVAPIERVKLLLQVQ---HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 419
+SK + P + +K +QVQ + Q+Y G+ D F I KE+G + ++G
Sbjct: 42 ISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGLFKG 97
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 34.7 bits (76), Expect = 0.036
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +3
Query: 333 IAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 449
I ++Y G+++AF RI +++G+ +F+RG +I P
Sbjct: 19 ITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMP 57
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 34.3 bits (75), Expect = 0.047
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +3
Query: 237 PGWRYLAAVSKTAVA-----PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 401
P WR+++ + VA P++ V+ L VQ +S + ++ Y GIV A RI E+G+
Sbjct: 28 PLWRFVSGATAGVVATASTHPLDVVRARLTVQDMSTRSISN--YTGIVSALRRIHIEEGI 85
Query: 402 LSFWRGNFANVIRYFP 449
++G +++ P
Sbjct: 86 RGLYKGLVPSLVSIAP 101
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 31.9 bits (69), Expect = 0.25
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 348 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 449
+Y G+ +I +++GL +++GN N++R P
Sbjct: 590 KYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVP 623
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 31.5 bits (68), Expect = 0.33
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 351 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 440
Y + +A R+ KE+G+L+ WRG +R
Sbjct: 35 YTNVFNALYRMSKEEGVLTLWRGYIPTAVR 64
Score = 30.7 bits (66), Expect = 0.58
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 273 AVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 419
A P++ K +Q + I YKG +D RI + +G+ + W+G
Sbjct: 110 ASMPVDIAKTRIQNMRI---IDGKPEYKGTMDVLARIVRNEGVFALWKG 155
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 31.5 bits (68), Expect = 0.33
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Frame = +3
Query: 255 AAVSKTAVAPIERVKLLLQVQHVSKQIAA---------DQRYKGIVDAFVRIPKEQGLLS 407
A++++ A PI+ K+ LQ+Q S +A+ D Y+G++ V + K +G+ +
Sbjct: 25 ASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGMLGTMVTLFKTEGMKT 84
Query: 408 FWRGNFANVIR 440
++G + R
Sbjct: 85 MYKGLIPGIHR 95
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 31.1 bits (67), Expect = 0.44
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 261 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 419
+ P + VK+ Q + + I YK + AF +I K++G L W G
Sbjct: 127 IGSAIATPTDLVKIRFQAVKIGETIP----YKNMFHAFYKIAKKEGFLGLWTG 175
Score = 28.7 bits (61), Expect = 2.3
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Frame = +3
Query: 141 AATPTSTYSPSEDHI--IEQNVEPRRSGRVR*GLPGWRYLAAVSKTAVAPIERVKLLLQV 314
AA + T P+ DH + N E R G V L V+ +P++ V+
Sbjct: 183 AACISGTQIPTYDHTKHLLLNAELMREG-VALHLASALVAGFVATCVASPVDIVRTRFMT 241
Query: 315 QHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 440
Q + Y+G +D + + +G+L+ ++G F N R
Sbjct: 242 QPKDTK-GRPLVYQGTLDCIYKTVRHEGILALYKGFFPNWTR 282
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 31.1 bits (67), Expect = 0.44
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3
Query: 264 SKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 443
+ AV P++ +K LQ+ + + + Y GI+D +I +GL +F++G +I
Sbjct: 219 ASVAVNPLDVIKTRLQLLNRPQ---GEPNYNGIIDCAKKIYSNEGLAAFYKGAVPRMIVI 275
Query: 444 FP 449
P
Sbjct: 276 AP 277
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 31.1 bits (67), Expect = 0.44
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 252 LAAVSKTAV-APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 428
+A V+ + V P++RVK +LQ++ + Y G VD RI +E G+ ++G
Sbjct: 146 IAGVATSFVLTPLDRVKCILQIE----KAFGGSSYGGPVDCLRRIYREAGVRGVYKGISV 201
Query: 429 NVIRYFP 449
+R P
Sbjct: 202 TAMRDIP 208
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +3
Query: 282 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 449
P++ +K+ LQ + K YK D F +I + +G+ +RG ++ P
Sbjct: 58 PLDTIKVRLQAMPLPKP-GEPWMYKNSFDCFFKIIRNEGVYYLFRGVTVPILNSIP 112
>SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 30.7 bits (66), Expect = 0.58
Identities = 23/61 (37%), Positives = 29/61 (47%)
Frame = +2
Query: 188 RTKCRTSPIRSRSLRTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRRPALQGYRR 367
RT+ R + R R + V+ RR DRR T A T R+Q DRRR + RR
Sbjct: 100 RTRARVTIRRQVDRRRTRARVTSRRQVDRRRTR------AQVTRRRQVDRRRTRARVTRR 153
Query: 368 R 370
R
Sbjct: 154 R 154
Score = 29.9 bits (64), Expect = 1.0
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Frame = +2
Query: 188 RTKCRTSPIRSRSLRTSWLAVSRRRLQDRRSTHRAC---------QAAAPSTARQQADRR 340
RT+ R + R R + V+ RR DRR T + A T+R+Q DRR
Sbjct: 70 RTRARVTSRRQVDRRRTRARVTSRRQVDRRRTRARVTIRRQVDRRRTRARVTSRRQVDRR 129
Query: 341 RPALQGYRRR 370
R Q RRR
Sbjct: 130 RTRAQVTRRR 139
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +2
Query: 188 RTKCRTSPIRSRSLRTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRR 343
RT+ R + R R + V+ RR DRR T A T+R+Q DRRR
Sbjct: 55 RTRARVTSRRQVDRRRTRARVTSRRQVDRRRTR------ARVTSRRQVDRRR 100
Score = 27.9 bits (59), Expect = 4.1
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +2
Query: 188 RTKCRTSPIRSRSLRTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRRPALQGYRR 367
RT+ + + R R + V+ RR DRR T A T+R+Q DRRR + R
Sbjct: 40 RTRAQVTSRRQVDQRRTRARVTSRRQVDRRRTR------ARVTSRRQVDRRRTRARVTSR 93
Query: 368 R 370
R
Sbjct: 94 R 94
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 30.7 bits (66), Expect = 0.58
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 264 SKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 422
S+ VA ER +L+ Q Q +D RY+G +D+F + +G L +RG+
Sbjct: 278 SRQTVACPERCGVLMASQGKRGQYMSDARYRGHLDSFRGDARYRGHLDSFRGD 330
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 30.7 bits (66), Expect = 0.58
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 282 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 449
PI+ K +QVQ + Q A +Y+ + A I + G+ ++G A ++R P
Sbjct: 221 PIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVRNIP 276
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 30.7 bits (66), Expect = 0.58
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 276 VAPIERVKLLLQVQHVSKQIAADQRYK-GIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 449
+ P E +K LQ QH + I+ K G++D ++I + G +RG A R P
Sbjct: 124 LCPAELIKCRLQAQHQTNLISGMAGPKSGVIDVTMQIIRNDGFQGLFRGMTATWAREVP 182
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 30.3 bits (65), Expect = 0.77
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 363 VDAFVRIPKEQGLLSFWRG 419
+DA ++IP+ +GL S WRG
Sbjct: 64 IDALIKIPRYEGLSSLWRG 82
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 30.3 bits (65), Expect = 0.77
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +3
Query: 360 IVDAFVRIPKEQGLLSFWRGNFANVIRYFP 449
++ AF I + +GLL++++GN A ++R FP
Sbjct: 13 VLTAFRAIYRNEGLLAYFKGNGAMMLRTFP 42
>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
Length = 965
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 254 EIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 123
++PP R +A + + FD+ + I TR RGG ++ WG+
Sbjct: 539 DLPPDRTEVAPSFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 581
>SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 302 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 403
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 83 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 117
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 302 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 403
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 217
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 282 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 449
P++ VK Q + +Y G D +I G+ +F +G A ++R FP
Sbjct: 377 PVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFGQGLLATILRGFP 432
>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 404
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 302 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 403
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 261 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 295
>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
Length = 550
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 302 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 403
A+ S RQQ R RP GY +R R +P+ SP
Sbjct: 84 ASGSNQRQQQARGRPQASGYNQRSRRGYPRARASP 118
>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 254 EIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 123
++PP R +A + FD+ + I TR RGG ++ WG+
Sbjct: 1266 DLPPDRTEVAPPFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 1308
>SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 406
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 302 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 403
A+ S RQQ R RP +GY +R R +P+ +P
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARATP 217
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 27.9 bits (59), Expect = 4.1
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +2
Query: 176 RSHNRTKCRTSPIRSRSLRTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRRPALQ 355
+ ++R++ R+S R RS S R R + R HR + +PS R R +
Sbjct: 318 KKYSRSRSRSSERRRRSRSRSTEHRYRSRSRSPRRKHRRSTSTSPSR------RYRSGKK 371
Query: 356 GYRRRLRA 379
G++RR R+
Sbjct: 372 GHKRRSRS 379
>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 792
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +3
Query: 30 ISKKAHTYPLCSRDYEITPNLLFKNQELV----FRDPPSACAATPTSTYSPS 173
++ ++ Y C + E +P + + ++D SAC A P TY PS
Sbjct: 106 LTDESELYGYCQSNGEWSPAMYTSRHRCMCHAGYQDTVSACTACPRGTYKPS 157
>SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16)
Length = 494
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 230 RTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRRPAL 352
+T+ +AV L RRS +A P+T R+ + RP L
Sbjct: 337 KTAKIAVKTNNLLRRRSVAVTAPSAKPNTTRRMSTASRPTL 377
>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2418
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 78 ITPN----LLFKNQELVFRDPPSACAATPTSTYSPSEDHII 188
+TPN LL + + R+P SA S YSPSE I+
Sbjct: 963 LTPNVRYQLLIRASDSATRNPSSAQVPVYVSVYSPSESPIV 1003
>SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 27.5 bits (58), Expect = 5.4
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = +3
Query: 108 ELVFRDPPSA----CAATPTSTYSPSEDHIIEQNVEPRRSGRVR*GLPGWRYLAAVSKTA 275
E + RDP + A+P S I EQNVE S + G+ G T
Sbjct: 269 EALTRDPKESDTNVSRASPDSHLQTVISEIREQNVELVESSPIEAGVDGETPAPDEKSTD 328
Query: 276 VAPIERVKLLLQVQHVSK-QIA 338
VAPI V LQ + ++ QIA
Sbjct: 329 VAPISEVADALQEKEENEPQIA 350
>SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39)
Length = 1037
Score = 27.5 bits (58), Expect = 5.4
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +2
Query: 203 TSPIRSRSLRTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRRPALQGYRRRLR 376
TSP+ SRS + ++ ++R ++ R C AAA + ++A AL R RLR
Sbjct: 778 TSPLTSRSRKALGKVEPNQQSEERGASCRRCAAAAGNPGAERA-AAGTALARRRCRLR 834
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 27.5 bits (58), Expect = 5.4
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Frame = +2
Query: 176 RSHNRTKCRTSPIRSRSLRTSWLAVSRRRLQDR-RSTHRACQAAAPSTARQQADR--RRP 346
RSH RT C R+RS+ W+ V R Q + R ++ Q A A+ A R RRP
Sbjct: 3308 RSHRRTVC-----RARSI--GWIKVRRAISQGKFREYIKSEQTQAIKMAKFVARRSNRRP 3360
Query: 347 ALQ----GYRRRLRAHPQGAGSPFILAW*LRQR 433
+ G+R+ RA QG ++ + +RQR
Sbjct: 3361 VCKARSVGWRKVRRAIDQGNFREYMRSEHIRQR 3393
>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 1170
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +3
Query: 57 LCSRDYEITPNLLFKN---QELVFRDPPSACAATPTSTYSPSED 179
LC +D E++P LLF N +++ R P A P++ S ED
Sbjct: 54 LCGKDQEVSPKLLFGNDLAKQVRDRKKPPVW-ANPSAPQSAKED 96
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 27.1 bits (57), Expect = 7.2
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +2
Query: 176 RSHNRTKCRTSPIRSRSLRTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRRPALQ 355
R + + CR RSRS SR R R +R+ ++ P R Q+ RRR
Sbjct: 308 RYRDSSSCRRRRSRSRSRSPKSRLRSRSR-SPYRIRYRS-RSRPPRGRRSQSPRRRRTRS 365
Query: 356 GYRRRLRAHPQG-AGSP 403
RRR R+ A SP
Sbjct: 366 RSRRRCRSKSSSIASSP 382
>SB_24124| Best HMM Match : DUF1213 (HMM E-Value=3.9)
Length = 283
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 251 SRRRLQDRRSTHRACQAAAPSTARQQADRR 340
S+ + QD++ST + QA +P ++QQA R+
Sbjct: 124 SKPQDQDKQSTDQDKQATSPKISKQQAPRQ 153
>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
Length = 435
Score = 27.1 bits (57), Expect = 7.2
Identities = 21/70 (30%), Positives = 28/70 (40%)
Frame = +2
Query: 194 KCRTSPIRSRSLRTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRRPALQGYRRRL 373
K +TS S +T ++ + QD+ R QAA P A + RP Q R R
Sbjct: 194 KTKTSRNTKTSRKTKTSRKTKTKPQDQDQAARPSQAARPRQAARPRQASRPR-QAARPRQ 252
Query: 374 RAHPQGAGSP 403
R A P
Sbjct: 253 RERTGQASRP 262
>SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)
Length = 300
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 43 HTPTLCAPVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLVKIT 183
H C PV+ L K + ++ H RV PPR +H++ +T
Sbjct: 256 HVNACCNPVVYSLHNPKLRKCMN--RLVHHKRVRTSPPRAVHVLAMT 300
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 215 RSRSLRTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRRPALQGYRRR 370
R R T W RR+ + +R R Q + R++ RRR L+ RRR
Sbjct: 669 RLRRRLTGWRRRIRRQRRRKRRRKRRRQRRSRRRRRRRRRRRRSQLRRKRRR 720
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,360,704
Number of Sequences: 59808
Number of extensions: 297765
Number of successful extensions: 901
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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