Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0557
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    30   0.017
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    26   0.37 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    24   1.1  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   6.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 159  NRKCFREGESRRAPSAGPMLPVAAVTRRTSR 251
            N +C  +  S  APS  PM+P   VT  TSR
Sbjct: 2281 NTECHPDASSTMAPSTTPMVPDKPVTTTTSR 2311


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 124 PSGT-PSMSPQKGSPASQPYTLNRN*TVAAVSSRRNSPHT 8
           PSG  P ++P  G P S PYT+  N   + +SS    P++
Sbjct: 110 PSGNVPPLTPSPGPP-SHPYTVISNGYSSPMSSGSYDPYS 148


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 639 LFCWARSKPARAVTSALGWCNFTSQ 565
           L CW  +K A  +   L W  +T++
Sbjct: 375 LTCWQDTKSANKIAMKLFWAQYTNK 399


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 239 THLAHFPHTYPSSVTLNSE 295
           THL H P TY   +T+N++
Sbjct: 475 THLQHQPFTY--KITVNNQ 491


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,163
Number of Sequences: 336
Number of extensions: 4044
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)