BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0557 (746 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.8 SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 26 6.6 SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.7 >SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 249 Score = 27.1 bits (57), Expect = 2.8 Identities = 18/79 (22%), Positives = 32/79 (40%) Frame = -1 Query: 611 LGQSLPHSAGVTSLHNRLTVPSQSNRQTVTLFPHTHDSLVAFVLKGSNYIMGTARIDVVF 432 L QS ++ S NR VP F H+ S + + +G N + +++ Sbjct: 27 LSQSSNNNVSYASSSNRNFVPQNVLNNEYQSFQHSSTSQPSVLRQGKNAFLKPSQLSFNM 86 Query: 431 NHSNASESDQTKVQNVETN 375 N S S + + N+ T+ Sbjct: 87 NSSEISNTHWARDFNILTS 105 >SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 390 Score = 25.8 bits (54), Expect = 6.6 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -3 Query: 213 WVQRMALSCSRLHGNTSCLFVLSL 142 W+ +AL+ SR +GNT L L L Sbjct: 189 WMDSVALNLSRYYGNTEALSSLPL 212 >SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Schizosaccharomyces pombe|chr 1|||Manual Length = 1995 Score = 25.4 bits (53), Expect = 8.7 Identities = 21/91 (23%), Positives = 37/91 (40%) Frame = -1 Query: 557 TVPSQSNRQTVTLFPHTHDSLVAFVLKGSNYIMGTARIDVVFNHSNASESDQTKVQNVET 378 T+ S S ++ T+ P DS V + S+ + ID+ S E + + +E+ Sbjct: 39 TIFSTSRKEQSTIEPM--DSFVENNIANSSSQQSVSEIDIQLPSSEPKEGVKEESNLIES 96 Query: 377 N*IKSLGNIGPLKTSATELLAVLNSSGAPNL 285 N + ++ I P T + S NL Sbjct: 97 NSLDNVQEINPQNTIGDKSAHTEEESSNDNL 127 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,217,084 Number of Sequences: 5004 Number of extensions: 67211 Number of successful extensions: 192 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 187 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 192 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 355273338 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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