Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0557
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   6.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   8.7  

>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/79 (22%), Positives = 32/79 (40%)
 Frame = -1

Query: 611 LGQSLPHSAGVTSLHNRLTVPSQSNRQTVTLFPHTHDSLVAFVLKGSNYIMGTARIDVVF 432
           L QS  ++    S  NR  VP          F H+  S  + + +G N  +  +++    
Sbjct: 27  LSQSSNNNVSYASSSNRNFVPQNVLNNEYQSFQHSSTSQPSVLRQGKNAFLKPSQLSFNM 86

Query: 431 NHSNASESDQTKVQNVETN 375
           N S  S +   +  N+ T+
Sbjct: 87  NSSEISNTHWARDFNILTS 105


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 213 WVQRMALSCSRLHGNTSCLFVLSL 142
           W+  +AL+ SR +GNT  L  L L
Sbjct: 189 WMDSVALNLSRYYGNTEALSSLPL 212


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 21/91 (23%), Positives = 37/91 (40%)
 Frame = -1

Query: 557 TVPSQSNRQTVTLFPHTHDSLVAFVLKGSNYIMGTARIDVVFNHSNASESDQTKVQNVET 378
           T+ S S ++  T+ P   DS V   +  S+     + ID+    S   E  + +   +E+
Sbjct: 39  TIFSTSRKEQSTIEPM--DSFVENNIANSSSQQSVSEIDIQLPSSEPKEGVKEESNLIES 96

Query: 377 N*IKSLGNIGPLKTSATELLAVLNSSGAPNL 285
           N + ++  I P  T   +       S   NL
Sbjct: 97  NSLDNVQEINPQNTIGDKSAHTEEESSNDNL 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,084
Number of Sequences: 5004
Number of extensions: 67211
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)