Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0557
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 31 1.3
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553... 30 1.7
07_01_0532 - 3935661-3935720,3936314-3936412,3937804-3937908,393... 30 2.2
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 29 3.0
10_01_0071 - 905696-909028 29 3.9
07_01_0683 - 5145539-5145601,5146113-5146146,5146549-5146650,514... 29 5.2
06_03_0487 - 21352955-21353080,21353164-21353357,21353815-213539... 29 5.2
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257... 29 5.2
04_04_0055 + 22403608-22403865,22403977-22404075,22404172-224042... 29 5.2
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 28 6.9
03_02_0830 + 11611588-11611660,11611720-11611952 28 6.9
08_02_1019 - 23657175-23658047 28 9.1
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708 28 9.1
07_01_0975 + 8223269-8224354 28 9.1
07_01_0446 - 3371829-3372132,3374691-3375673 28 9.1
07_01_0445 - 3365244-3366227 28 9.1
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 28 9.1
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 259 WKVRE-VRLVTAATGSMGPADGALLLSPSRKHFL 161
W R VR V A + S+GP D + L P KHFL
Sbjct: 839 WVKRSAVRFVVACSESIGPVDTFVYLFPHLKHFL 872
>09_02_0569 -
10752756-10753164,10753229-10753644,10754149-10755349,
10756770-10756991,10757615-10757767,10757883-10758034,
10758142-10758222,10758353-10758598,10759394-10759516
Length = 1000
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 546 TIEQTNCHSISTHTRQSRSFCFERVQLYNGN 454
T++ CHSI T T ++ C E V LYN N
Sbjct: 891 TVDIIGCHSIKTLTWINQLPCLEEVYLYNCN 921
>07_01_0532 -
3935661-3935720,3936314-3936412,3937804-3937908,
3939474-3939666,3940434-3940513,3940607-3940904,
3941139-3941431
Length = 375
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 216 LPVAAVTRRTSRTFH-IPTHHQ 278
+P+A V R+TSR H +PT HQ
Sbjct: 277 MPIATVNRKTSRAIHSVPTWHQ 298
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 745 MDTSDGRSVMRKRIPLYSMREGAGLMSFCFMVTAASLLLGEIEAGSGSHFRTR 587
+DT+DG + ++++PL R G G F AAS LG G+ H R R
Sbjct: 381 LDTNDG-TCTKQQLPLRYGRAGGGYTMFVKTGGAASPALGGGGGGNHHHHRLR 432
>10_01_0071 - 905696-909028
Length = 1110
Score = 29.1 bits (62), Expect = 3.9
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = -1
Query: 668 VLLLHGHRCFSSAGRDRSR--LGQSLPHSAGVTSLH-NRLT---VPSQSNRQTVTLFPHT 507
+LL R F +G + S G SLP + V L NR T PS S +T +
Sbjct: 157 MLLASNIRSFDVSGNNMSGDISGVSLPATLAVLDLSGNRFTGAIPPSLSGCAGLTTLNLS 216
Query: 506 HDSLVAFVLKGSNYIMGTARIDVVFNH 426
++ L + +G I G +DV +NH
Sbjct: 217 YNGLAGAIPEGIGAIAGLEVLDVSWNH 243
>07_01_0683 -
5145539-5145601,5146113-5146146,5146549-5146650,
5147398-5147658,5148729-5148832,5148999-5149246,
5149360-5149420,5149507-5149682,5149787-5149844,
5150804-5150908,5150995-5151228
Length = 481
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -1
Query: 698 VLDEGRRRS--NVLLLHGHRCFS--SAGRDRSRLGQSLPHSAGVTSLHNRLTVPS 546
VL G RR N L+H HR +AG S + + +P+ G +HNRL++PS
Sbjct: 369 VLGVGGRRMMINGGLVHSHRSLEDFNAGDAFSSMKRRVPN--GPDPIHNRLSIPS 421
>06_03_0487 -
21352955-21353080,21353164-21353357,21353815-21353973,
21354117-21354242,21354502-21354704,21354892-21355019,
21355323-21355565,21356734-21356928
Length = 457
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Frame = -2
Query: 271 WVG--MWK--VREVRLVTAATGSMGPADGA-LLLSPSRKHFLFICVEPGSTPRCPSGTPS 107
W G +WK +V + A+ GS G G L +CVEP +P G+P
Sbjct: 297 WTGPEIWKDTAGKVDVFVASVGSGGTLTGVGRYLKMKNPSINIVCVEPSESPVISGGSPG 356
Query: 106 MSPQKGSPA 80
+G+ A
Sbjct: 357 PHKIQGTGA 365
>06_01_0358 +
2573241-2573324,2573509-2573636,2573769-2573971,
2574129-2574254,2574522-2574680,2574857-2575050,
2575251-2575376
Length = 339
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Frame = -2
Query: 271 WVG--MWK--VREVRLVTAATGSMGPADGA-LLLSPSRKHFLFICVEPGSTPRCPSGTPS 107
W G +WK +V + A +G+ G G L ICVEP +P G PS
Sbjct: 179 WTGPEIWKDTAGKVDIFVAGSGTGGTISGVGKYLKMKNPAVKVICVEPAESPVISGGKPS 238
Query: 106 MSPQKG-SPASQPYTLN 59
+G P P L+
Sbjct: 239 RHKIQGMGPGFVPKNLD 255
>04_04_0055 +
22403608-22403865,22403977-22404075,22404172-22404213,
22404350-22404479,22405118-22405219,22405960-22406066
Length = 245
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 722 GDEEAHPLVLDEGRRRSNVLLLHGHR 645
G+E A P EG RR L LHG R
Sbjct: 6 GEEGARPAAAAEGARRPRFLCLHGFR 31
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 584 GVTSLHNRLTVPSQSNRQTVTLFP-HTHDSLVAFVLKGSNYIMGTARIDVVFN 429
GV S N T PS +R+ LFP S + + S+++ R DV+ +
Sbjct: 627 GVRSTENLFTTPSMDSRRAFALFPSECPKSSLTSSTRTSSHLHSPTRTDVLLS 679
>03_02_0830 + 11611588-11611660,11611720-11611952
Length = 101
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 278 LMMGRYVESARGASSHR---RYRQHGSSGWRSPALAFTETLPVYLC 150
L+ GRY+ ++ AS H R R G+ PA++ LP++LC
Sbjct: 3 LLWGRYMCTSALASCHTDPMRARSTGALITEQPAVSLISNLPLHLC 48
>08_02_1019 - 23657175-23658047
Length = 290
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +3
Query: 171 FREGESRRAPSAGPMLPVAAVTRRTSRTFHIPTHHQL-P*IRSPAAVEHSQQ 323
F ES GP P +AV+ + HHQ P R+PA H QQ
Sbjct: 108 FHRKESESPTGVGPAEP-SAVSPAAISAYGASPHHQFSPYYRTPAGYLHHQQ 158
>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
Length = 2033
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 658 FMVTAASLLLGEIEAGSGSHF 596
F + S+++G+I AG GSHF
Sbjct: 460 FSIRRRSIIVGQITAGDGSHF 480
>07_01_0975 + 8223269-8224354
Length = 361
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 232 TAATGSMGPADGALLLSPSRKHFLFICVEPGSTPR-CPSGTPSMSPQKGSPASQP 71
T GS G + SPS P +P P+G+P+ P G PAS P
Sbjct: 235 TGYGGSSGSPSSSPSSSPSSSPSGSPSSSPSGSPSGSPAGSPAGGPTAGGPASGP 289
>07_01_0446 - 3371829-3372132,3374691-3375673
Length = 428
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 52 NFYSMCMAVKLEIPSVVTLMEFRLDSAEYCQAQHK 156
NF++ C+ + E+P+VV ++RL A H+
Sbjct: 101 NFHAGCLRLAAELPAVVLSFDYRLAPEHRLPAAHE 135
>07_01_0445 - 3365244-3366227
Length = 327
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 28 GCSRLPPFNFYSMCMAVKLEIPSVVTLMEFRL 123
G R P NF++ C+ + E+P+VV ++RL
Sbjct: 90 GSGRWP--NFHAWCLRLAAELPAVVLSFDYRL 119
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 117 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVA 227
PLG + G NR+ F +G R++ LP A
Sbjct: 814 PLGDQSATDGPDANNRRAFNKGNKRKSHDRSSKLPYA 850
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,792,962
Number of Sequences: 37544
Number of extensions: 513633
Number of successful extensions: 1673
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1672
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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