Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0557
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38013| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_29592| Best HMM Match : DUF1528 (HMM E-Value=6.8) 30 1.7
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15) 29 3.0
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45) 29 5.3
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30) 28 7.0
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_58636| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_43092| Best HMM Match : 7tm_1 (HMM E-Value=0.23) 28 9.2
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 28 9.2
>SB_38013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 33.1 bits (72), Expect = 0.25
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 675 PAPSLIEYKGMRFLITDRPSDVSI 746
P ++EYK M+FLITDRP++ ++
Sbjct: 14 PGAVMLEYKSMKFLITDRPTNSTL 37
>SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 569 HNRLTVPSQSNRQTVTLFPHTHDSLVAFVLKGSNYIMGTARIDVVFNHSNASESDQ 402
HN +T+PSQ +R T+T+ H + +A S Y T I ++H+ + Q
Sbjct: 252 HNTITIPSQYHRNTITIQSQYHHNTIAI---PSQYHHNTIAIPSQYHHNTITIPSQ 304
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = -1
Query: 569 HNRLTVPSQSNRQTVTLFPHTHDSLVAFVLKGSNYIMGTARIDVVFNHSNASESDQ 402
HN +T+PS+ + T+T+ H + + S Y T I ++H+ + Q
Sbjct: 94 HNTITIPSRHQQNTITIPSQYHHNTITM---PSQYHRNTIAIPSQYHHNTITTPTQ 146
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -1
Query: 569 HNRLTVPSQSNRQTVTLFPHTHDSLVAFVLKGSNYIMGTARIDVVFNH 426
HN + +PSQ + T+T+ H + +A S Y T I ++H
Sbjct: 285 HNTIAIPSQYHHNTITIPSQYHHNTIAI---PSQYHRNTIAIPSQYHH 329
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 569 HNRLTVPSQSNRQTVTLFPHTH 504
HN +T+PSQ N T+T+ H
Sbjct: 384 HNTITIPSQYNHNTITIPSQYH 405
>SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 31.9 bits (69), Expect = 0.57
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 454 LPALMSFSTTRTHPKAIKQKFRMWKQIKLNHSE 356
LP M T +T PK + Q FR +KQ++ H +
Sbjct: 40 LPPNMRLQTPKTGPKGVIQDFRRYKQLETEHKK 72
>SB_29592| Best HMM Match : DUF1528 (HMM E-Value=6.8)
Length = 129
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 713 EAHPLVLDEGRRRSNVLLLHGHRCFSSAGRDRSRLGQSLPHSAGVTSLHNR 561
+AH + + R+++ L+ GH AG R LG P AG T L+ +
Sbjct: 65 KAHEKIANPRFRKASQLIELGHEKPREAGETRRYLGYEKPRGAGKTRLYRK 115
>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
Length = 333
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -2
Query: 190 LLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 83
L++P K+F++ CV PG++ R P+ PS++ +P
Sbjct: 207 LVAPITKYFIYGCVTPGAS-RTPTLVPSINGGNTTP 241
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 557 TVPSQSNRQTVTLFPHTHDSLVAFVLKGSNYIMGTARIDVVFNHSNASESDQT 399
TV ++ + TVT+ D+++ FVL+ I G ++DV + + S QT
Sbjct: 1056 TVITEPDTATVTILDD--DAVIGFVLESITVIEGAGKVDVEVKRTGNTGSPQT 1106
>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
Length = 671
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 151 VEPGSTPRCPSGTPSMSPQKGSPASQPYT 65
+ P S P PS +P+ + GSP QP++
Sbjct: 77 LNPTSDPEIPSSSPNDNHLPGSPGEQPFS 105
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 614 RLGQSLPHSAGVTSLHNRL 558
+L SL H G++SLHNRL
Sbjct: 3953 KLSNSLDHDGGLSSLHNRL 3971
>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
Length = 634
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -1
Query: 335 SATELLAVLNSSGAPNLR*LMMGRYVESARGASSHRRYRQH 213
+A LL +N++ PNL+ + ++ ++ R H R++QH
Sbjct: 62 TAPALLDAMNAAKIPNLQITTVTQHQQNQRHHQQHHRHQQH 102
>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 238 LVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSG 116
LV A T ++ PAD +L+ SPSR CV T C +G
Sbjct: 751 LVFAWTYNVNPADASLIASPSRS-----CVHGNVTLTCTAG 786
>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 180 GESRRAPSAGPMLPVAAVTRRTSRTFHIPTH 272
G R+PS + P+ A+ +R S FH+ H
Sbjct: 481 GRKSRSPSILVVRPINAIRKRASSVFHLHDH 511
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +3
Query: 72 GCEAGDPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSR 251
GCE+G CG DG+ + GV CFR+ + P+ P P R+T R
Sbjct: 493 GCESGLT-CGK-DGMVIAWDGV---------GCFRDLRPSKTPTTEPQRPETTTKRKTQR 541
Query: 252 TF 257
F
Sbjct: 542 RF 543
>SB_58636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -1
Query: 650 HRCFSSAGRDRSRLGQSLPHS-AG----VTSLHNRLTVPSQSNRQTVTLFPHTHDSLVA 489
HR ++ R RL SL H+ AG VTSLH ++ ++ +L HTH +L A
Sbjct: 29 HRSVTATHRKEKRL-TSLTHTHAGRSHAVTSLHRSVSATHRNEELLPSLTIHTHRTLTA 86
>SB_43092| Best HMM Match : 7tm_1 (HMM E-Value=0.23)
Length = 417
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 180 GESRRAPSAGPMLPVAAVTRRTSRTFHIPTH 272
G R+PS + P+ A+ +R S FH+ H
Sbjct: 294 GRKSRSPSILVVRPINAIRKRASSVFHLHDH 324
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 105 IDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSRTFHIPT 269
++ + G V +T++++ + G RR PSAG + RR+ R PT
Sbjct: 494 VERILCGGTKVKLNATELSKTSIKSGGRRRTPSAGKRVRKRHSIRRSRRNTTSPT 548
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,358,898
Number of Sequences: 59808
Number of extensions: 567917
Number of successful extensions: 1633
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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