BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0557 (746 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_38013| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25 SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33 SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57 SB_29592| Best HMM Match : DUF1528 (HMM E-Value=6.8) 30 1.7 SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15) 29 3.0 SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0 SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45) 29 5.3 SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30) 28 7.0 SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2 SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2 SB_58636| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2 SB_43092| Best HMM Match : 7tm_1 (HMM E-Value=0.23) 28 9.2 SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 28 9.2 >SB_38013| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 88 Score = 33.1 bits (72), Expect = 0.25 Identities = 12/24 (50%), Positives = 19/24 (79%) Frame = +3 Query: 675 PAPSLIEYKGMRFLITDRPSDVSI 746 P ++EYK M+FLITDRP++ ++ Sbjct: 14 PGAVMLEYKSMKFLITDRPTNSTL 37 >SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 506 Score = 32.7 bits (71), Expect = 0.33 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = -1 Query: 569 HNRLTVPSQSNRQTVTLFPHTHDSLVAFVLKGSNYIMGTARIDVVFNHSNASESDQ 402 HN +T+PSQ +R T+T+ H + +A S Y T I ++H+ + Q Sbjct: 252 HNTITIPSQYHRNTITIQSQYHHNTIAI---PSQYHHNTIAIPSQYHHNTITIPSQ 304 Score = 28.3 bits (60), Expect = 7.0 Identities = 14/56 (25%), Positives = 26/56 (46%) Frame = -1 Query: 569 HNRLTVPSQSNRQTVTLFPHTHDSLVAFVLKGSNYIMGTARIDVVFNHSNASESDQ 402 HN +T+PS+ + T+T+ H + + S Y T I ++H+ + Q Sbjct: 94 HNTITIPSRHQQNTITIPSQYHHNTITM---PSQYHRNTIAIPSQYHHNTITTPTQ 146 Score = 27.9 bits (59), Expect = 9.2 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = -1 Query: 569 HNRLTVPSQSNRQTVTLFPHTHDSLVAFVLKGSNYIMGTARIDVVFNH 426 HN + +PSQ + T+T+ H + +A S Y T I ++H Sbjct: 285 HNTIAIPSQYHHNTITIPSQYHHNTIAI---PSQYHRNTIAIPSQYHH 329 Score = 27.9 bits (59), Expect = 9.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -1 Query: 569 HNRLTVPSQSNRQTVTLFPHTH 504 HN +T+PSQ N T+T+ H Sbjct: 384 HNTITIPSQYNHNTITIPSQYH 405 >SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 136 Score = 31.9 bits (69), Expect = 0.57 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 454 LPALMSFSTTRTHPKAIKQKFRMWKQIKLNHSE 356 LP M T +T PK + Q FR +KQ++ H + Sbjct: 40 LPPNMRLQTPKTGPKGVIQDFRRYKQLETEHKK 72 >SB_29592| Best HMM Match : DUF1528 (HMM E-Value=6.8) Length = 129 Score = 30.3 bits (65), Expect = 1.7 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = -1 Query: 713 EAHPLVLDEGRRRSNVLLLHGHRCFSSAGRDRSRLGQSLPHSAGVTSLHNR 561 +AH + + R+++ L+ GH AG R LG P AG T L+ + Sbjct: 65 KAHEKIANPRFRKASQLIELGHEKPREAGETRRYLGYEKPRGAGKTRLYRK 115 >SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15) Length = 333 Score = 29.5 bits (63), Expect = 3.0 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = -2 Query: 190 LLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 83 L++P K+F++ CV PG++ R P+ PS++ +P Sbjct: 207 LVAPITKYFIYGCVTPGAS-RTPTLVPSINGGNTTP 241 >SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 7645 Score = 29.1 bits (62), Expect = 4.0 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = -1 Query: 557 TVPSQSNRQTVTLFPHTHDSLVAFVLKGSNYIMGTARIDVVFNHSNASESDQT 399 TV ++ + TVT+ D+++ FVL+ I G ++DV + + S QT Sbjct: 1056 TVITEPDTATVTILDD--DAVIGFVLESITVIEGAGKVDVEVKRTGNTGSPQT 1106 >SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45) Length = 671 Score = 28.7 bits (61), Expect = 5.3 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 151 VEPGSTPRCPSGTPSMSPQKGSPASQPYT 65 + P S P PS +P+ + GSP QP++ Sbjct: 77 LNPTSDPEIPSSSPNDNHLPGSPGEQPFS 105 >SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 6863 Score = 28.3 bits (60), Expect = 7.0 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -1 Query: 614 RLGQSLPHSAGVTSLHNRL 558 +L SL H G++SLHNRL Sbjct: 3953 KLSNSLDHDGGLSSLHNRL 3971 >SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30) Length = 634 Score = 28.3 bits (60), Expect = 7.0 Identities = 12/41 (29%), Positives = 24/41 (58%) Frame = -1 Query: 335 SATELLAVLNSSGAPNLR*LMMGRYVESARGASSHRRYRQH 213 +A LL +N++ PNL+ + ++ ++ R H R++QH Sbjct: 62 TAPALLDAMNAAKIPNLQITTVTQHQQNQRHHQQHHRHQQH 102 >SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1741 Score = 28.3 bits (60), Expect = 7.0 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -2 Query: 238 LVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSG 116 LV A T ++ PAD +L+ SPSR CV T C +G Sbjct: 751 LVFAWTYNVNPADASLIASPSRS-----CVHGNVTLTCTAG 786 >SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 604 Score = 27.9 bits (59), Expect = 9.2 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +3 Query: 180 GESRRAPSAGPMLPVAAVTRRTSRTFHIPTH 272 G R+PS + P+ A+ +R S FH+ H Sbjct: 481 GRKSRSPSILVVRPINAIRKRASSVFHLHDH 511 >SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1468 Score = 27.9 bits (59), Expect = 9.2 Identities = 20/62 (32%), Positives = 27/62 (43%) Frame = +3 Query: 72 GCEAGDPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSR 251 GCE+G CG DG+ + GV CFR+ + P+ P P R+T R Sbjct: 493 GCESGLT-CGK-DGMVIAWDGV---------GCFRDLRPSKTPTTEPQRPETTTKRKTQR 541 Query: 252 TF 257 F Sbjct: 542 RF 543 >SB_58636| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 103 Score = 27.9 bits (59), Expect = 9.2 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Frame = -1 Query: 650 HRCFSSAGRDRSRLGQSLPHS-AG----VTSLHNRLTVPSQSNRQTVTLFPHTHDSLVA 489 HR ++ R RL SL H+ AG VTSLH ++ ++ +L HTH +L A Sbjct: 29 HRSVTATHRKEKRL-TSLTHTHAGRSHAVTSLHRSVSATHRNEELLPSLTIHTHRTLTA 86 >SB_43092| Best HMM Match : 7tm_1 (HMM E-Value=0.23) Length = 417 Score = 27.9 bits (59), Expect = 9.2 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +3 Query: 180 GESRRAPSAGPMLPVAAVTRRTSRTFHIPTH 272 G R+PS + P+ A+ +R S FH+ H Sbjct: 294 GRKSRSPSILVVRPINAIRKRASSVFHLHDH 324 >SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) Length = 851 Score = 27.9 bits (59), Expect = 9.2 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = +3 Query: 105 IDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSRTFHIPT 269 ++ + G V +T++++ + G RR PSAG + RR+ R PT Sbjct: 494 VERILCGGTKVKLNATELSKTSIKSGGRRRTPSAGKRVRKRHSIRRSRRNTTSPT 548 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,358,898 Number of Sequences: 59808 Number of extensions: 567917 Number of successful extensions: 1633 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1474 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1626 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2022185256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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